gabP:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00324 PFAM:PF00324]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00324 PFAM:PF00324]
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
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Revision as of 21:54, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000013870 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000016244 (score: 0.231)
  • YP_026258 (score: 0.364)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020051 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000019910 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000021266 (score: 0.708)
  • ENSBTAP00000009736 (score: 0.672)
  • ENSBTAP00000023826 (score: 0.660)
  • ENSBTAP00000020054 (score: 0.651)
  • ENSBTAP00000020048 (score: 0.629)
  • ENSBTAP00000020050 (score: 0.613)
  • ENSBTAP00000004741 (score: 0.610)
  • ENSBTAP00000012324 (score: 0.593)
  • ENSBTAP00000015329 (score: 0.578)
  • ENSBTAP00000017752 (score: 0.568)
  • ENSBTAP00000019058 (score: 0.481)
  • ENSBTAP00000013304 (score: 0.471)
  • ENSBTAP00000019911 (score: 0.432)
  • ENSBTAP00000010274 (score: 0.417)
  • ENSBTAP00000004740 (score: 0.396)
  • ENSBTAP00000012086 (score: 0.363)
  • ENSBTAP00000031960 (score: 0.327)
  • ENSBTAP00000004738 (score: 0.324)
  • ENSBTAP00000019053 (score: 0.240)
  • ENSBTAP00000004742 (score: 0.216)
  • ENSBTAP00000033212 (score: 0.199)
  • ENSBTAP00000013958 (score: 0.112)
  • ENSBTAP00000007774 (score: 0.101)
  • YP_026258 (score: 0.320)

From Inparanoid:20070104

Caenorhabditis briggsae

  • YP_026258 (score: 0.354)
  • WBGene00029162 (score: 1.000; bootstrap: 89%)
  • WBGene00029182 (score: 1.000; bootstrap: 72%)
  • WBGene00038808 (score: 0.573)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000022120 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000009958 (score: 0.316)
  • ENSCAFP00000024875 (score: 0.315)
  • ENSCAFP00000010331 (score: 0.302)
  • ENSCAFP00000004025 (score: 0.286)
  • ENSCAFP00000021989 (score: 0.260)
  • ENSCAFP00000009940 (score: 0.239)
  • ENSCAFP00000018083 (score: 0.233)
  • ENSCAFP00000023985 (score: 0.175)
  • YP_026258 (score: 0.216)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015092 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000009114 (score: 0.481)
  • ENSCINP00000015061 (score: 0.376)
  • YP_026258 (score: 0.307)

From Inparanoid:20070104

Drosophila melanogaster

  • YP_026258 (score: 0.367)
  • FBgn0031064 (score: 1.000; bootstrap: 100%)
  • FBgn0037203 (score: 0.228)
  • FBgn0036764 (score: 0.225)
  • FBgn0036984 (score: 0.197)
  • FBgn0036493 (score: 0.193)

From Inparanoid:20070104

Drosophila pseudoobscura

  • YP_026258 (score: 0.366)
  • GA11681-PA (score: 1.000; bootstrap: 100%)
  • GA18954-PA (score: 0.224)
  • GA10777-PA (score: 0.221)
  • GA12151-PA (score: 0.196)
  • GA20214-PA (score: 0.157)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000015210 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000006942 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000022132 (score: 0.447)
  • ENSGALP00000027546 (score: 0.405)
  • ENSGALP00000009182 (score: 0.352)
  • YP_026258 (score: 0.316)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000231706 (score: 1.000; bootstrap: 100%)
  • ENSP00000298085 (score: 0.285)
  • ENSP00000004531 (score: 0.249)
  • ENSP00000340324 (score: 0.218)
  • ENSP00000215750 (score: 0.200)
  • YP_026258 (score: 0.220)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000018385 (score: 1.000; bootstrap: 78%)
  • YP_026258 (score: 0.220)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017922 (score: 1.000; bootstrap: 95%)
  • ENSMODP00000023784 (score: 0.295)
  • ENSMODP00000006229 (score: 0.289)
  • ENSMODP00000011481 (score: 0.267)
  • ENSMODP00000020049 (score: 0.217)
  • YP_026258 (score: 0.204)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000026872 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000034277 (score: 0.262)
  • ENSPTRP00000009787 (score: 0.219)
  • ENSPTRP00000024285 (score: 0.199)
  • ENSPTRP00000037822 (score: 0.092)
  • YP_026258 (score: 0.220)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002560 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000001234 (score: 0.318)
  • ENSRNOP00000014809 (score: 0.301)
  • ENSRNOP00000005580 (score: 0.298)
  • ENSRNOP00000038036 (score: 0.296)
  • ENSRNOP00000035746 (score: 0.085)
  • YP_026258 (score: 0.353)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137252 (score: 1.000; bootstrap: 86%)
  • NEWSINFRUP00000169769 (score: 0.552)
  • NEWSINFRUP00000147106 (score: 0.495)
  • NEWSINFRUP00000168050 (score: 0.290)
  • YP_026258 (score: 0.360)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00012714001 (score: 1.000; bootstrap: 100%)
  • GSTENP00006821001 (score: 0.266)
  • GSTENP00003539001 (score: 0.263)
  • GSTENP00033801001 (score: 0.244)
  • GSTENP00035216001 (score: 0.241)
  • GSTENP00018927001 (score: 0.238)
  • GSTENP00008630001 (score: 0.236)
  • GSTENP00019046001 (score: 0.207)
  • GSTENP00007050001 (score: 0.173)
  • GSTENP00017133001 (score: 0.077)
  • YP_026258 (score: 0.231)

From Inparanoid:20070104

Shigella flexneri

GABP

From SHIGELLACYC

E. coli O157

GABP

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00324


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Notes

Links

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Name URL Comments
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References

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