exbD:Gene Product(s): Difference between revisions

Standard name	ExbD product
Synonyms	membrane spanning protein in TonB-ExbB-ExbD complex product^[1], B3005 product^[2]^[1], ExbD product^[2]^[1]
Product description	ExbD uptake of enterochelin; tonB-dependent uptake of B colicins^[2]^[3]; Component of ; TonB energy transducing system^[3]; Outer Membrane Ferric Citrate Transport System^[3]; Outer Membrane Ferrichrome Transport System^[3]; Outer Membrane Ferric Enterobactin Transport System^[3]; vitamin B12 outer membrane transport complex^[3]; ferric dicitrate uptake system^[3]; ferrichrome uptake system^[3]; Ferric Enterobactin Transport System^[3]; vitamin B12 transport system^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Aspect	Notes	Status
	GO:0015404	ion-gradient-driven energizer activity	F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006826	iron ion transport	P	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions

Partner Type	Partner	Notes
Protein	Subunits of TonB energy transducing system	could be indirect
Protein	Subunits of Outer Membrane Ferric Citrate Transport System	could be indirect
Protein	Subunits of Outer Membrane Ferrichrome Transport System	could be indirect
Protein	Subunits of Outer Membrane Ferric Enterobactin Transport System	could be indirect
Protein	Subunits of vitamin B12 outer membrane transport complex	could be indirect
Protein	Subunits of ferric dicitrate uptake system	could be indirect
Protein	Subunits of ferrichrome uptake system	could be indirect
Protein	Subunits of Ferric Enterobactin Transport System	could be indirect
Protein	Subunits of vitamin B12 transport system	could be indirect
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MAMHLNENLD DNGEMHDINV TPFIDVMLVL LIIFMVAAPL ATVDVKVNLP ASTSTPQPRP EKPVYLSVKA DNSMFIGNDP VTDETMITAL NALTEGKKDT TIFFRADKTV DYETLMKVMD TLHQAGYLKI GLVGEETAKA K
Mol. Wt	15.53 kDa (calc) ^[2]
pI
Extinction coefficient	4470 (calc based on 3 Y, 0 W, and 0 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG10272-MONOMER
UniProt (EcoliWiki Page)	UniProt:P0ABV2
PFAM (EcoliWiki Page)	PFAM:PF02472
RefSeq (EcoliWiki Page)	RefSeq:NP_417478
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.00 ^3.01 ^3.02 ^3.03 ^3.04 ^3.05 ^3.06 ^3.07 ^3.08 ^3.09 ^3.10 ^3.11 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] 3.00 ^3.01 ^3.02 ^3.03 ^3.04 ^3.05 ^3.06 ^3.07 ^3.08 ^3.09 ^3.10 ^3.11 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

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[2]

[3]

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 |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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 ==Nomenclature==
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 !{{table heading style}} |Synonyms
 |
-membrane spanning protein in TonB-ExbB-ExbD complex<ref name='LIB:Riley_2006'/>, B3005<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ExbD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+membrane spanning protein in TonB-ExbB-ExbD complex product<ref name='LIB:Riley_2006'/>, B3005 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ExbD product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
 |-
 !{{table heading style}} |Product description
 |
-ExbD uptake of enterochelin; tonB-dependent uptake of B colicins<ref name='LIB:EcoCyc10.6'/>; ExbD uptake of enterochelin; tonB-dependent uptake of B colicins<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:TonB energy transducing system|TonB energy transducing system]]<ref name='LIB:EcoCyc11.1'/>; TonB energy transducing system<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:Outer Membrane Ferric Citrate Transport System|Outer Membrane Ferric Citrate Transport System]]<ref name='LIB:EcoCyc11.1'/>; Outer Membrane Ferric Citrate Transport System<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:Outer Membrane Ferrichrome Transport System|Outer Membrane Ferrichrome Transport System]]<ref name='LIB:EcoCyc11.1'/>; Outer Membrane Ferrichrome Transport System<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:Outer Membrane Ferric Enterobactin Transport System|Outer Membrane Ferric Enterobactin Transport System]]<ref name='LIB:EcoCyc11.1'/>; Outer Membrane Ferric Enterobactin Transport System<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:vitamin B12 outer membrane transport complex|vitamin B12 outer membrane transport complex]]<ref name='LIB:EcoCyc11.1'/>; vitamin B12 outer membrane transport complex<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:ferric dicitrate uptake system|ferric dicitrate uptake system]]<ref name='LIB:EcoCyc11.1'/>; ferric dicitrate uptake system<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:ferrichrome uptake system|ferrichrome uptake system]]<ref name='LIB:EcoCyc11.1'/>; ferrichrome uptake system<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:Ferric Enterobactin Transport System|Ferric Enterobactin Transport System]]<ref name='LIB:EcoCyc11.1'/>; Ferric Enterobactin Transport System<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:vitamin B12 transport system|vitamin B12 transport system]]<ref name='LIB:EcoCyc11.1'/>; vitamin B12 transport system<ref name='LIB:EcoCyc11.1'/>
+ExbD uptake of enterochelin; tonB-dependent uptake of B colicins<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
+Component of ; [[:Category:Complex:TonB energy transducing system|TonB energy transducing system]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Outer Membrane Ferric Citrate Transport System|Outer Membrane Ferric Citrate Transport System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Outer Membrane Ferrichrome Transport System|Outer Membrane Ferrichrome Transport System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Outer Membrane Ferric Enterobactin Transport System|Outer Membrane Ferric Enterobactin Transport System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:vitamin B12 outer membrane transport complex|vitamin B12 outer membrane transport complex]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ferric dicitrate uptake system|ferric dicitrate uptake system]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ferrichrome uptake system|ferrichrome uptake system]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Ferric Enterobactin Transport System|Ferric Enterobactin Transport System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:vitamin B12 transport system|vitamin B12 transport system]]<ref name='LIB:EcoCyc11.1'/>
 |-
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 ==Function==
+{{BacktoTop}}
 <protect>
-===Gene Ontology===
+<big>'''Gene Ontology'''</big>
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 required fields missing
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 could be indirect
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 ===Notes===
 ==Localization==
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 ===Notes===
 ==Structure and Physical Properties==
+{{BacktoTop}}
 <protect>
-===Physical Properties===
+<span id="Sequence"></span><big>'''Physical Properties'''</big>
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 (calc based on 3 Y, 0 W, and 0 C residues)
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-===Domains/Motifs/Modification Sites===
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 ==Gene Product Resources==
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 <!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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 ==Links==
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 ==References==
+{{BacktoTop}}
 {{RefHelp}}
 <references/>
 __NOTOC__
-[[Category:GO:0015404]][[Category:GO:0006826]][[Category:Complex:TonB energy transducing system]][[Category:Complex:Outer Membrane Ferric Citrate Transport System]][[Category:Complex:Outer Membrane Ferrichrome Transport System]][[Category:Complex:Outer Membrane Ferric Enterobactin Transport System]][[Category:Complex:vitamin B12 outer membrane transport complex]][[Category:Complex:ferric dicitrate uptake system]][[Category:Complex:ferrichrome uptake system]][[Category:Complex:Ferric Enterobactin Transport System]][[Category:Complex:vitamin B12 transport system]]</noinclude>
+</noinclude>

exbD:Gene Product(s): Difference between revisions

Revision as of 16:47, 28 July 2007

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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