yheT:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417812&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417812&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:02, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000013379 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000015798 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G50790 (score: 1.000; bootstrap: 100%)
  • AT1G34340 (score: 0.121)
  • AT5G49950 (score: 0.120)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000007496 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000009303 (score: 0.279)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029943 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00013358 (score: 1.000; bootstrap: 100%)
  • WBGene00016644 (score: 0.776)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006965 (score: 1.000; bootstrap: 76%)
  • ENSCAFP00000026955 (score: 0.327)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015883 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040912-90 (score: 1.000; bootstrap: 89%)
  • ZDB-CDNA-040912-92 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0188543 (score: 1.000; bootstrap: 100%)
  • DDB0184458 (score: 0.110)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0033382 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17475-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000024049 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000289119 (score: 1.000; bootstrap: 91%)
  • ENSP00000326491 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000005854 (score: 1.000; bootstrap: 57%)
  • ENSMMUP00000003206 (score: 0.193)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019615 (score: 1.000; bootstrap: 86%)
  • ENSMODP00000026849 (score: 0.284)

From Inparanoid:20070104

Mus musculus

  • MGI:1931013 (score: 1.000; bootstrap: 75%)
  • MGI:2147183 (score: 0.356)

From Inparanoid:20070104

Oryza gramene

  • Q6H6S1 (score: 1.000; bootstrap: 100%)
  • Q6I5U7 (score: 0.121)
  • Q5NA00 (score: 0.112)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020191 (score: 1.000; bootstrap: 76%)
  • ENSPTRP00000016854 (score: 0.384)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000009339 (score: 1.000; bootstrap: 80%)
  • ENSRNOP00000039335 (score: 0.300)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL095C (score: 1.000; bootstrap: 100%)
  • YBR177C (score: 0.542)
  • YMR210W (score: 0.121)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000149924 (score: 1.000; bootstrap: 85%)
  • NEWSINFRUP00000137068 (score: 0.398)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00030354001 (score: 1.000; bootstrap: 72%)
  • GSTENP00007423001 (score: 0.355)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000006831 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000039258 (score: 0.090)

From Inparanoid:20070104

Shigella flexneri

YHET

From SHIGELLACYC

E. coli O157

YHET

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00561

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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