rplN:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417769&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417769&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014430 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000012613 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G46160 (score: 1.000; bootstrap: 99%)
  • AT1G17560 (score: 0.455)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000004190 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000013834 (score: 0.788)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030677 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004435 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024349 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000015448 (score: 0.387)
  • ENSCAFP00000012543 (score: 0.137)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000006537 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000001178 (score: 0.336)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-8756 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1041 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201610 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0010078 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17595-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000002493 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000346039 (score: 1.000; bootstrap: 100%)
  • ENSP00000272885 (score: 0.613)
  • ENSP00000350108 (score: 0.363)

From Inparanoid:20070104

Mus musculus

  • MGI:1929455 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6QY49 (score: 1.000; bootstrap: 68%)
  • P12137 (score: 1.000; bootstrap: 68%)
  • Q6END7 (score: 1.000; bootstrap: 70%)
  • Q6ENS7 (score: 1.000; bootstrap: 70%)
  • Q6L3G2 (score: 1.000; bootstrap: 70%)
  • Q7F4T2 (score: 1.000; bootstrap: 70%)
  • Q8LID9 (score: 0.991)
  • P08529 (score: 0.972)
  • Q69NK5 (score: 0.963)
  • Q95H51 (score: 0.954)
  • Q6AUK3 (score: 0.945)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000015471 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000022159 (score: 0.613)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005471 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000034140 (score: 0.703)
  • ENSRNOP00000030059 (score: 0.594)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKL170W (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC8877 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000152919 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026166001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000051170 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPLN

From SHIGELLACYC

E. coli O157

RPLN

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00238

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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