lysA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417315&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417315&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:54, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000008816 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000009019 (score: 0.426)
  • ENSANGP00000020224 (score: 0.423)
  • ENSANGP00000008815 (score: 0.317)
  • ENSANGP00000020301 (score: 0.171)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G14390 (score: 1.000; bootstrap: 100%)
  • AT5G11880 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038323 (score: 1.000; bootstrap: 100%)
  • WBGene00033029 (score: 0.106)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003844 (score: 1.000; bootstrap: 100%)
  • WBGene00018764 (score: 0.107)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000007432 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000008768 (score: 0.181)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190621 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0013307 (score: 1.000; bootstrap: 100%)
  • FBgn0013308 (score: 0.727)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021660 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018485 (score: 0.511)
  • ENSMODP00000007263 (score: 0.358)

From Inparanoid:20070104

Mus musculus

  • MGI:1859169 (score: 1.000; bootstrap: 100%)
  • MGI:97402 (score: 0.437)
  • MGI:2442093 (score: 0.363)

From Inparanoid:20070104

Oryza gramene

  • Q6ZG77 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000031505 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000007259 (score: 0.421)
  • ENSRNOP00000007999 (score: 0.316)
  • ENSRNOP00000045880 (score: 0.194)
  • ENSRNOP00000049464 (score: 0.169)
  • ENSRNOP00000039827 (score: 0.131)
  • ENSRNOP00000043900 (score: 0.124)
  • ENSRNOP00000037115 (score: 0.083)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKL184W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC1444c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156319 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000137759 (score: 0.389)
  • NEWSINFRUP00000147907 (score: 0.277)
  • NEWSINFRUP00000147578 (score: 0.219)
  • NEWSINFRUP00000168901 (score: 0.177)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000020790 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Shigella flexneri

LYSA

From SHIGELLACYC

E. coli O157

LYSA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF02784

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Notes

Links

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Name URL Comments
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References

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