yfhR:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>WikiEntryBot
Automated import of articles
Edited by wikibot
Line 247: Line 247:
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417029&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417029&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:01, 14 November 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000005169 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025550 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G20520 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003149 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030054 (score: 1.000; bootstrap: 65%)
  • WBGene00034526 (score: 0.117)
  • WBGene00039742 (score: 0.110)
  • WBGene00040829 (score: 0.063)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010561 (score: 1.000; bootstrap: 71%)
  • WBGene00008497 (score: 0.099)
  • WBGene00044003 (score: 0.091)
  • WBGene00008498 (score: 0.069)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000009028 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005286 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-051120-54 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0188509 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0025109 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15028-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027178 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000330222 (score: 1.000; bootstrap: 51%)
  • ENSP00000258884 (score: 0.672)
  • ENSP00000250974 (score: 0.643)
  • ENSP00000346816 (score: 0.630)
  • ENSP00000350939 (score: 0.331)
  • ENSP00000333435 (score: 0.240)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024842 (score: 1.000; bootstrap: 50%)
  • ENSMMUP00000021731 (score: 0.613)
  • ENSMMUP00000016211 (score: 0.490)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003224 (score: 1.000; bootstrap: 73%)
  • ENSMODP00000005442 (score: 1.000; bootstrap: 70%)
  • ENSMODP00000024206 (score: 0.757)

From Inparanoid:20070104

Mus musculus

  • MGI:1916154 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Oryza gramene

  • Q6YSE8 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035925 (score: 1.000; bootstrap: 49%)
  • ENSPTRP00000024264 (score: 0.508)
  • ENSPTRP00000012586 (score: 0.266)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019563 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL320W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC32H83 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000159682 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026010001 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000005694 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Shigella flexneri

S2753

From SHIGELLACYC

E. coli O157

Z3802

From ECOO157CYC

edit table

See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Do-It-Yourself Web Tools


Notes

Families

[back to top]


Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000005169 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025550 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G20520 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003149 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030054 (score: 1.000; bootstrap: 65%)
  • WBGene00034526 (score: 0.117)
  • WBGene00039742 (score: 0.110)
  • WBGene00040829 (score: 0.063)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010561 (score: 1.000; bootstrap: 71%)
  • WBGene00008497 (score: 0.099)
  • WBGene00044003 (score: 0.091)
  • WBGene00008498 (score: 0.069)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000009028 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005286 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-051120-54 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0188509 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0025109 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15028-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027178 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000330222 (score: 1.000; bootstrap: 51%)
  • ENSP00000258884 (score: 0.672)
  • ENSP00000250974 (score: 0.643)
  • ENSP00000346816 (score: 0.630)
  • ENSP00000350939 (score: 0.331)
  • ENSP00000333435 (score: 0.240)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024842 (score: 1.000; bootstrap: 50%)
  • ENSMMUP00000021731 (score: 0.613)
  • ENSMMUP00000016211 (score: 0.490)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003224 (score: 1.000; bootstrap: 73%)
  • ENSMODP00000005442 (score: 1.000; bootstrap: 70%)
  • ENSMODP00000024206 (score: 0.757)

From Inparanoid:20070104

Mus musculus

  • MGI:1916154 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Oryza gramene

  • Q6YSE8 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035925 (score: 1.000; bootstrap: 49%)
  • ENSPTRP00000024264 (score: 0.508)
  • ENSPTRP00000012586 (score: 0.266)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019563 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL320W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC32H83 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000159682 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026010001 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000005694 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Shigella flexneri

S2753

From SHIGELLACYC

E. coli O157

Z3802

From ECOO157CYC

edit table

See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.



Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yfhR:Evolution&oldid=326399"