puuE:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415818&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415818&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:56, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027287 (score: 1.000; bootstrap: 98%)
  • ENSANGP00000015566 (score: 0.137)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037892 (score: 1.000; bootstrap: 97%)
  • WBGene00033756 (score: 0.075)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020139 (score: 1.000; bootstrap: 95%)
  • WBGene00020382 (score: 0.073)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000027717 (score: 1.000; bootstrap: 95%)
  • ENSCAFP00000016665 (score: 0.116)
  • ENSCAFP00000000346 (score: 0.099)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050913-100 (score: 1.000; bootstrap: 98%)
  • ZDB-CDNA-050612-172 (score: 1.000; bootstrap: 98%)
  • ZDB-CDNA-040425-2065 (score: 0.117)
  • ZDB-GENE-040426-1133 (score: 0.117)
  • ZDB-CDNA-051127-18 (score: 0.101)
  • ZDB-GENE-051127-33 (score: 0.101)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037186 (score: 1.000; bootstrap: 95%)
  • FBgn0036381 (score: 0.115)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10859-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008293 (score: 1.000; bootstrap: 46%)

From Inparanoid:20070104

Mus musculus

  • MGI:2146052 (score: 1.000; bootstrap: 99%)
  • MGI:1919010 (score: 0.072)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC10397c (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000160485 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000164668 (score: 0.102)
  • NEWSINFRUP00000155980 (score: 0.100)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014411001 (score: 1.000; bootstrap: 99%)
  • GSTENP00019899001 (score: 0.111)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000035868 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GOAG

From SHIGELLACYC

E. coli O157

GOAG

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00202

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Notes

Links

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Name URL Comments
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References

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Categories

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