copA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415017&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415017&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:50, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000008866 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021869 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G44790 (score: 1.000; bootstrap: 91%)
  • AT1G63440 (score: 0.281)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013674 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000013214 (score: 0.212)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040040 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000834 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006351 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000025432 (score: 0.433)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014894 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0218568 (score: 1.000; bootstrap: 100%)
  • DDB0168129 (score: 0.144)
  • DDB0217251 (score: 0.144)
  • DDB0190385 (score: 0.079)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030343 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027449 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000012813 (score: 0.450)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000242839 (score: 1.000; bootstrap: 100%)
  • ENSP00000345728 (score: 0.452)
  • ENSP00000355352 (score: 0.314)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016907 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000021711 (score: 0.364)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004937 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000013156 (score: 0.452)

From Inparanoid:20070104

Mus musculus

  • MGI:103297 (score: 1.000; bootstrap: 100%)
  • MGI:99400 (score: 0.447)

From Inparanoid:20070104

Oryza gramene

  • Q6H7M3 (score: 1.000; bootstrap: 95%)
  • Q6JAG2 (score: 0.417)
  • Q6JAH7 (score: 0.402)
  • Q6JAG3 (score: 0.369)
  • Q6H6Z1 (score: 0.255)
  • Q7XU05 (score: 0.247)
  • Q655X4 (score: 0.186)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018319 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000003395 (score: 0.409)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR270W (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC29A31 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000152440 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148707 (score: 0.294)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020077001 (score: 1.000; bootstrap: 100%)
  • GSTENP00017010001 (score: 0.219)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044753 (score: 1.000; bootstrap: 71%)
  • ENSXETP00000009760 (score: 0.349)

From Inparanoid:20070104

Shigella flexneri

YBAR

From SHIGELLACYC

E. coli O157

YBAR

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00403

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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