polB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414602&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414602&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:56, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018383 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022139 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G63960 (score: 1.000; bootstrap: 89%)
  • AT1G67500 (score: 0.090)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010742 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041727 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00012936 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019936 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005791 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000015719 (score: 0.108)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030114-9 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0232274 (score: 1.000; bootstrap: 100%)
  • DDB0232268 (score: 1.000; bootstrap: 100%)
  • DDB0232271 (score: 0.096)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0004493 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19530-PA (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026266 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000314415 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000028348 (score: 1.000; bootstrap: 53%)
  • ENSMMUP00000028356 (score: 0.109)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009125 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:97741 (score: 1.000; bootstrap: 100%)
  • MGI:1337131 (score: 0.125)

From Inparanoid:20070104

Oryza gramene

  • Q9LRE6 (score: 1.000; bootstrap: 82%)
  • Q53P50 (score: 1.000; bootstrap: 84%)
  • Q53NH0 (score: 0.518)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000019473 (score: 1.000; bootstrap: 62%)
  • ENSPTRP00000031607 (score: 0.062)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026797 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000000725 (score: 0.119)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDL102W (score: 1.000; bootstrap: 100%)
  • YPL167C (score: 0.085)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC3364 (score: 1.000; bootstrap: 100%)
  • SPAC6880 (score: 0.077)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000160398 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00021892001 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000047196 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Shigella flexneri

POLB

From SHIGELLACYC

E. coli O157

POLB

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF03104

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.



Categories

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