amiD:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Newer edit →
imported>WikiEntryBot
Automated import of articles
 
imported>WikiEntryBot
Automated import of articles
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|ybjR}}{{Tab|Gene|ybjR}}{{Tab On|Gene Product(s)|ybjR}}{{Tab|Expression|ybjR}}{{Tab|Evolution|ybjR}}{{Tab|On One Page|ybjR}}{{TabsBottom}}
{{Tab|Quickview|ybjR}}{{Tab|Gene|ybjR}}{{Tab On|Gene Product(s)|ybjR}}{{Tab|Expression|ybjR}}{{Tab|Evolution|ybjR}}{{Tab|On One Page|ybjR}}{{TabsBottom}}
Line 18: Line 27:
</noinclude>
</noinclude>
==Nomenclature==
==Nomenclature==
<!--box uid=421aa90e079fa326b6494f812ad13e79..T469fcdda5bf49-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.O46aa480988349-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|{{Prettytable}}
{|{{Prettytable}}
Line 28: Line 37:
!{{table heading style}} |Synonyms
!{{table heading style}} |Synonyms
|
|
predicted amidase and lipoprotein<ref name='LIB:Riley_2006'/>, YbjR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0867<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted amidase and lipoprotein product<ref name='LIB:Riley_2006'/>, YbjR product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0867 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!{{table heading style}} |Product description
!{{table heading style}} |Product description
|
|
predicted amidase and lipoprotein<ref name='LIB:EcoCyc10.6'/>; predicted amidase and lipoprotein<ref name='LIB:EcoCyc11.1'/>
predicted amidase and lipoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


|-
|-
Line 39: Line 48:
*
*
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..T469fcdda5bf49&page=&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.O46aa480988349&page=21552&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..T469fcdda5bf49-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.O46aa480988349-->
{{Product_nomenclature_help}}
{{Product_nomenclature_help}}
<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
Line 48: Line 57:


==Function==
==Function==
{{BacktoTop}}
<protect>
<protect>
===Gene Ontology===
<big>'''Gene Ontology'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..F469fcddb03ebc-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.H46aa480a80641-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='37724'  
{|class = 'sortable' {{Prettytable}} id='157744'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..F469fcddb03ebc&page=&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.H46aa480a80641&page=21552&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..F469fcddb03ebc-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.H46aa480a80641-->
{{Product_GO_help}}
{{Product_GO_help}}
===Interactions===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..H469fcddb3e49c-->
<span id="Interactions"></span><big>'''Interactions'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.Y46aa480af2b9f-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='37725'  
{|class = 'sortable' {{Prettytable}} id='157745'  
|- {{table heading style}}
|- {{table heading style}}
!Partner Type!!Partner!!Notes
!Partner Type!!Partner!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..H469fcddb3e49c&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.Y46aa480af2b9f&page=21552&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..H469fcddb3e49c-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.Y46aa480af2b9f-->
{{Product_interactions_help}}
{{Product_interactions_help}}
<!--Function_notes--></protect>
<!--Function_notes--></protect>
===Notes===
===Notes===


==Localization==
==Localization==
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.A46a7d9c8bfa82-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='106524'
|- {{table heading style}}
!Compartment!!Description!!Evidence!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.A46a7d9c8bfa82&page=21552&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.A46a7d9c8bfa82-->
<protect><!--Localization_notes--></protect>


<protect><!--Localization_notes--></protect>
===Notes===
===Notes===


==Structure and Physical Properties==
==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<protect>
===Physical Properties===
<span id="Sequence"></span><big>'''Physical Properties'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..W469fcddc71083-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.M46aa480cb6622-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|{{Prettytable}}
{|{{Prettytable}}
Line 107: Line 130:
56380 - 56505 (calc based on 12 Y, 7 W, and 1 C residues)  
56380 - 56505 (calc based on 12 Y, 7 W, and 1 C residues)  
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..W469fcddc71083&page=&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.M46aa480cb6622&page=21552&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..W469fcddc71083-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.M46aa480cb6622-->
{{Product_physical_properties_help}}
{{Product_physical_properties_help}}
===Domains/Motifs/Modification Sites===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469fcddc88bb2-->
<big>'''Domains/Motifs/Modification Sites'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.E46aa480d1e0c5-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='37727'  
{|class = 'sortable' {{Prettytable}} id='157747'  
|- {{table heading style}}
|- {{table heading style}}
!Type!!Residues!!Description!!Notes
!Type!!Residues!!Description!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..O469fcddc88bb2&page=&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.E46aa480d1e0c5&page=21552&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469fcddc88bb2-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.E46aa480d1e0c5-->
{{Product_domains_motifs_help}}
{{Product_domains_motifs_help}}
===Structure===


<span id="Structure"></span><big>'''Structure'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.X46a7d9ca661a0-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='106525'
|- {{table heading style}}
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.X46a7d9ca661a0&page=21552&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.X46a7d9ca661a0-->
{{Product_structure_help}}
{{Product_structure_help}}
<!--Structure_notes--></protect>
<!--Structure_notes--></protect>
Line 130: Line 163:


==Gene Product Resources==
==Gene Product Resources==
<!--box uid=421aa90e079fa326b6494f812ad13e79..Q469fcddc9e762-->
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.G46aa480db748b-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='37728'  
{|class = 'sortable' {{Prettytable}} id='157748'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Resource type!!Source!!Notes/Reference
!Resource type!!Source!!Notes/Reference
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Q469fcddc9e762&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.G46aa480db748b&page=21552&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..Q469fcddc9e762-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.G46aa480db748b-->
{{Product_resources_help}}
{{Product_resources_help}}
<protect><!--Resources_notes--></protect>
<protect><!--Resources_notes--></protect>
===Notes===
===Notes===


==Accessions in Other Databases==
==Accessions in Other Databases==
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469fcddcb2c26-->
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.T46aa480e0f293-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='37729'  
{|class = 'sortable' {{Prettytable}} id='157749'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!Database!!Accession!!Notes
Line 192: Line 228:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..O469fcddcb2c26&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.T46aa480e0f293&page=21552&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469fcddcb2c26-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.T46aa480e0f293-->
{{Product_accessions_help}}
{{Product_accessions_help}}
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
Line 201: Line 237:


==Links==
==Links==
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.O46a7d9cecb334-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='106528'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.21552.O46a7d9cecb334&page=21552&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.21552.O46a7d9cecb334-->
{{Links_help}}
<noinclude>


<noinclude>
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references/>
__NOTOC__
__NOTOC__
</noinclude>
</noinclude>

Revision as of 08:58, 28 July 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YbjR product

Synonyms

predicted amidase and lipoprotein product[1], YbjR product[2][1], B0867 product[2][1]

Product description

predicted amidase and lipoprotein[2][3]

EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes
edit table

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties

Sequence

at EcoCyc 

MRRFFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVLVIH YTADDFDSSL
ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL
ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL
FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR
VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD
Mol. Wt

31.07 kDa (calc) [2]

pI
Extinction coefficient

56380 - 56505 (calc based on 12 Y, 7 W, and 1 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
edit table

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structure Type Organism Accession Residues covered Notes
edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

[back to top]


Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6452-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P75820

UniProt (EcoliWiki Page)

UniProt:P75820

PFAM (EcoliWiki Page)

PFAM:PF01510

RefSeq (EcoliWiki Page)

RefSeq:NP_415388

ModBase (EcoliWiki Page)

ModBase:P75820

edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.


References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=amiD:Gene_Product(s)&oldid=183353"