Revision as of 16:15, 19 June 2006

Features at different databases

**Query inputs and outputs**
Input	Output	ASAP	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
gene name (e.g. lacY) sequence	description function,localization,process (GO definitions )	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
gene name (genbank namespace) more generally gene name (namespace1)	gene name (ecogene namespace) more generally gene name (namespace2) Some namespaces: genbank pdb ecogene	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
gene name	pathway	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes

**Query inputs and outputs**
Input	Output	ASAP	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
pathway	gene name	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes

**Query inputs and outputs**
Input	Output	ASAP	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
DNA location	Gene name	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
gene function (GO term) same for process and other GO branches	gene name	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
gene name	experimental data gene expression protein interaction	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
sequence	related sequence (BLAST)	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
gene name (species 1)	gene name( species 2)	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
gene name	*mutations sequence difference phenotype	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes

**Query inputs and outputs**
Input	Output	ASAP	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
strain ID	*gene name	ASAP	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
	*mutation	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
	*source	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes
metabolic process	*regulatory circuits transcription factors/sites	ASAP (replace these)	GenoBase	EcoCyc	EcoGene	RegulonDB	Other	Notes

@@ Line 162: / Line 162: @@
 |+ '''Query inputs and outputs'''
 ! '''Input''' !! '''Output'''
-| [[ASAP]]
+| '''[[ASAP]]'''
-| [[GenoBase]]
+| '''[[GenoBase]]'''
-| [[EcoCyc]]
+| '''[[EcoCyc]]'''
-| [[EcoGene]]
+| '''[[EcoGene]]'''
-| [[RegulonDB]]
+| '''[[RegulonDB]]'''
-| Other
+| '''Other'''
-| Notes
+| '''Notes'''
 |-
 | rowspan = '3' |strain ID
 |*gene name
-| [[ASAP]] (replace these)
+| [[ASAP]]
 | [[GenoBase]]
 | [[EcoCyc]]