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Revision as of 07:11, 31 July 2006
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| AlignACE | |
| Who: | Abigail Manson McGuire
Genetics Department Harvard Medical School |
| What: | short description |
| Where: | AlignACE |
| Last update in 1998? | |
| Upcoming events | none |
| Web Services | |
About AlignACE
AlignACE has a collection of predicted transcription factor binding sites based on scanACE, an algorithm published[1] by the Church lab.
Content
AlignACE has a table with links from the 59 DNA-binding proteins for which they have predicted binding sites by extrapolation from footprinting data. There are also summary tables and the code for scanACE and alignACE can be downloaded via a link to a Church lab website. These programs implement the approach of Berg and von Hippel [2][3]
Using AlignACE
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Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
- ↑ Robison, K et al. (1998) A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J. Mol. Biol. 284 241-54 PubMed
- ↑ Berg, OG & von Hippel, PH (1988) Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites. J Mol Biol 200 709-23 PubMed
- ↑ Berg, OG & von Hippel, PH (1987) Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol. 193 723-50 PubMed