|
|
| Line 13: |
Line 13: |
| </noinclude> | | </noinclude> |
| ==Nomenclature== | | ==Nomenclature== |
| {|{{Prettytable}} | | {{{NOMENCLATURE_TABLE}}} |
| | |
| |-
| |
| |bgcolor ='#DDDDFF'|'''Standard name''' || <!--gn--><!--/gn-->
| |
| |-
| |
| |bgcolor ='#DDDDFF'|'''Mnemonic''' || <!--pd--><!--/pd-->
| |
| |-
| |
| |bgcolor ='#DDDDFF'|'''Synonyms''' || <!--syn--><!--/syn-->
| |
| |-
| |
| |bgcolor ='#DDDDFF'|'''Accessions'''||
| |
| *bnum: <!--bnum--><!--/bnum-->
| |
| *JW: <!--jwnum--><!--/jwnum-->
| |
| *ECK: <!--eck--><!--/eck-->
| |
| *EcoCyc: <!--ecocyc--><!--/ecocyc-->
| |
| |-
| |
| |colspan = '2'|<small>The contents of this table are [[Help:AutoContent|automatically generated]].
| |
| Please do not edit this section. Users should add or edit information below "Notes"
| |
| </small>
| |
| |}
| |
| ===Notes=== | | ===Notes=== |
| | | <protect><!--Nomenclature_notes--></protect> |
| | {{{NOMENCLATURE_NOTES}}} |
| | <protect><!--Nomenclature_notes--></protect> |
| ==Location(s)== | | ==Location(s)== |
| {|{{Prettytable}} | | {{{LOCATION_TABLE}}} |
| |-
| |
| |bgcolor ='#DDDDFF'| '''Map location''' ||<!--maploc--><!--/maploc-->
| |
| |-
| |
| |bgcolor ='#DDDDFF'| '''Genome coordinates'''
| |
| |
| |
| *In MG1655: <!--mgleft--><!--/mgleft--> to <!--mgright--><!--/mgright-->
| |
| {{GBrowseFigureByCoord|<!--mgleftext--><!--/mgleftext-->|<!--mgrightext--><!--/mgrightext-->}}
| |
| *In W3110:<!--wleft--><!--/wleft--> to <!--wright--><!--/wright-->
| |
| {{GBrowseFigureByCoord|<!--wleftext--><!--/wleftext-->|<!--wrightext--><!--/wrightext-->|ecoli_W3110|W3110}}
| |
| |-
| |
| |bgcolor ='#DDDDFF'| '''Genome browsers'''
| |
| |
| |
| *[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&object=<!--eg--><!--/eg-->&chromosome=COLI-K12 EcoCyc] (MG1655)
| |
| *[http://www.ecogene.org/geneinfo.php?eg_id=<!--eg--><!--/eg--> EcoGene](MG1655)
| |
| *[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:<!--mgleft--><!--/mgleft-->..<!--mgright--><!--/mgright--> Gbrowse](MG1655)
| |
| *[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:<!--wleft--><!--/wleft-->..<!--wright--><!--/wright--> Gbrowse] (W3110)
| |
| |-
| |
| |colspan = '2'|<small>The contents of this table are [[Help:AutoContent|automatically generated]].
| |
| Please do not edit this section. Users should add or edit information below "Notes"
| |
| |}
| |
| ===Notes=== | | ===Notes=== |
| | | <protect><!--Nomenclature_notes--></protect> |
| | {{{LOCATION_NOTES}}} |
| | <protect><!--Nomenclature_notes--></protect> |
| ==DNA sequence and features== | | ==DNA sequence and features== |
| {|{{Prettytable}} | | {{{SEQUENCE_TABLE}}} |
| |-
| |
| |bgcolor ='#DDDDFF'| '''DNA sequence in MG1655'''
| |
| | <!--mg_gbrowse_fasta--><!--mg_gbrowse_fasta--> <!--mg_ecocyc_fasta--><!--mg_ecocyc_fasta-->
| |
| |-
| |
| |bgcolor ='#DDDDFF'| '''DNA sequence in W3110'''
| |
| | <!--w_gbrowse_fasta--><!--w_gbrowse_fasta-->
| |
| |-
| |
| |colspan = '2'|<small>The contents of this table are [[Help:AutoContent|automatically generated]].
| |
| Please do not edit this section. Users should add or edit information below "Notes"
| |
| </small>
| |
| | |
| |}
| |
| | |
| <!--dnafeatures--><!--/dnafeatures-->
| |
| | |
| ===Notes=== | | ===Notes=== |
| | <protect><!--Nomenclature_notes--></protect> |
|
| |
|
| ==Alleles and Phenotypes== | | ==Alleles and Phenotypes== |
| {|{{{Prettytable}} | | {{{ALLELES_TABLE}}} |
| |-
| |
| |bgcolor='#DDDDFF' |'''Allele'''
| |
| |bgcolor='#DDDDFF' |'''nt Change'''
| |
| |bgcolor='#DDDDFF' |'''aa Change'''
| |
| |bgcolor='#DDDDFF' |'''Phenotype'''
| |
| |bgcolor='#DDDDFF' |'''Reference'''
| |
| |bgcolor='#DDDDFF' |'''CGSC ID'''
| |
| |-
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |-
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |-
| |
| |colspan = '6'|<small>The contents of this table are [[Help:AutoContent|automatically generated]].
| |
| Please do not edit this section. Users should add or edit information below "Notes"
| |
| |}
| |
| ===Notes=== | | ===Notes=== |
| | <protect><!--Nomenclature_notes--></protect> |
| | <protect><!--Nomenclature_notes--></protect> |
| ==Genetic Resources== | | ==Genetic Resources== |
| | | {{{GENE_RESOURCES_TABLE}}} |
| {|{{Prettytable}} | |
| | |
| |-
| |
| |bgcolor ='#DDDDFF'|'''Linked Markers'''
| |
| |
| |
| |-
| |
| |bgcolor ='#DDDDFF'| '''Strains carrying mutation in gene'''
| |
| |
| |
| *[http://shigen.lab.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do;jsessionid=D340DC9D26B2DD7A214784AAF526B1E9.tomcat4_4 National BioResource Project E. coli strains] Keio collection, transposon insertions
| |
| *Singer et al. transposon insertion alleles at CGSC add links to Stock Center and to papers by Singer et al. and Nicholson et al.
| |
| |-
| |
| |bgcolor ='#DDDDFF'| '''Clones'''
| |
| |
| |
| *[http://ecoli.naist.jp/GB6/kohara_info.jsp?fword=101 Kohara phage]
| |
| *[http://ecoli.naist.jp/GB6/ex_archive.jsp?id=<!--jwnum--><!--/jwnum--> ASKA Clone]
| |
| |-
| |
| |bgcolor ='#DDDDFF'| '''F's and Hfrs'''
| |
| |
| |
| |-
| |
| |colspan = '2'|<small>The contents of this table are [[Help:AutoContent|automatically generated]].
| |
| Please do not edit this section. Users should add or edit information below "Notes"
| |
| </small>
| |
| |}
| |
| ===Notes=== | | ===Notes=== |
| | <protect><!--Gene_resources_notes--></protect> |
|
| |
|
| | <protect><!--Gene_resources_notes--></protect> |
| ==Accessions in Other Databases== | | ==Accessions in Other Databases== |
| {|{{Prettytable}} | | {{{GENE_ACCESSIONS_TABLE}}} |
| |-
| |
| |bgcolor ='#DDDDFF'|'''EcoCyc''' ||[http://biocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=<!--eg--><!--/eg--> <!--eg--><!--/eg-->]
| |
| |-
| |
| |colspan = '2'|<small>The contents of this table are [[Help:AutoContent|automatically generated]].
| |
| Please do not edit this section. Users should add or edit information below "Notes"
| |
| </small>
| |
| | |
| |}
| |
| ===Notes=== | | ===Notes=== |
| | <protect><!--Gene_accessions_notes--></protect> |
| | {{{GENE_ACCESSIONS_NOTES}}} |
| | <protect><!--Gene_accessions_notes--></protect> |
| ==References== | | ==References== |
| <references/> | | <references/> |
| __NOTOC__ | | __NOTOC__ |
| <noinclude><!--categories--><!--/categories--></noinclude> | | <noinclude><!--categories--><!--/categories--></noinclude> |
| [[{{{1}}}:Quickview|Quickview]]
|
|
Gene
|
|
[[{{{1}}}:Gene Product(s)|Gene Product(s)]]
|
|
[[{{{1}}}:Expression|Expression]]
|
|
[[{{{1}}}:Evolution|Evolution]]
|
|
[[{{{1}}}:On One Page|On One Page]]
|
|
|
Nomenclature
{{{NOMENCLATURE_TABLE}}}
Notes
{{{NOMENCLATURE_NOTES}}}
Location(s)
{{{LOCATION_TABLE}}}
Notes
{{{LOCATION_NOTES}}}
DNA sequence and features
{{{SEQUENCE_TABLE}}}
Notes
Alleles and Phenotypes
{{{ALLELES_TABLE}}}
Notes
Genetic Resources
{{{GENE_RESOURCES_TABLE}}}
Notes
Accessions in Other Databases
{{{GENE_ACCESSIONS_TABLE}}}
Notes
{{{GENE_ACCESSIONS_NOTES}}}
References