kdgR:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1826, b1827, JW1816, yebP''<ref name='LIB:Riley_2006'/>
''ECK1826, b1827, JW1816, yebP''<ref name='LIB:Riley_2006'/>, yebP''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1827<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdgR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1827<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdgR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1826, JW1816, yebP, b1827''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=kdgR&s=search PortEco search(kdgR)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=kdgR&loc=MG1655:1908123..1907332,W3110:1911813..1911022,DH10B:1998694..1997903,REL606:1888676..1887885,BW2952:1799391..1800182 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1799391&end=1800182&gene=kdgR&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdgR+AND+escherichia+coli Pubmed(kdgR)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=kdgR Textpresso(kdgR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=kdgR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7003]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003590&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=kdgR&loc=MG1655%3A1908123..1907332,W3110%3A1911813..1911022,DH10B%3A1998694..1997903,REL606%3A1888676..1887885,BW2952%3A1799391..1800182]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1799391&end=1800182&gene=kdgR&aa=manadldkqpdsvssvlkvfgilqalgeereigitelsqrvmmskstvyrflqtmktlgyvaqegesekysltlklfelgaralqnvdlirsadiqmrelsrltketihlgaldedsivyihkidsmynlrmysrigrrnplystaigkvllawrdrdevkqilegveykrstertitsteallpvldqvreqgygedneeqeeglrciavpvfdrfgvviaglsisfptlrfseerlqeyvamlhtaarkisaqmgyhdypf]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdgR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=kdgR]]&nbsp;&nbsp;


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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

kdgR

Gene Synonym(s)

ECK1826, b1827, JW1816, yebP[1], yebP

Product Desc.

KdgR transcriptional repressor[2][3]

Regulator of kdgK, kdgT, eda; possibly regulates several other genes, e.g. yjgK[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator[1], B1827[2][1], YebP[2][1], KdgR[2][1] , ECK1826, JW1816, yebP, b1827

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): kdgR[2]

Regulation/Activity
Quick Links



        

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Notes

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A kdgRyebQ clone conferred hypersensitivity to trimethoprim, but a yebQ-alone expression clone did not, leading the authors to conclude that overexpression of the transcriptional regulator YnfL was responsible for the Acr-S phenoptype.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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