hupB:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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HU, DNA-binding transcriptional regulator, beta subunit<ref name='LIB:Riley_2006'/>, B0440<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DpeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HopD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DbhB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HupB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''HU, DNA-binding transcriptional regulator, beta subunit<ref name='LIB:Riley_2006'/>, B0440<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DpeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HopD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DbhB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HupB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , dpeA, ECK0434, hopD, JW0430, b0440''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=hupB&s=search PortEco search(hupB)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=hupB&loc=MG1655:460675..460947,W3110:460675..460947,DH10B:400006..400278,REL606:433506..433778,BW2952:363434..363706 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=363434&end=363706&gene=hupB&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hupB+AND+escherichia+coli Pubmed(hupB)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hupB Textpresso(hupB)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hupB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10467]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000460&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hupB&loc=MG1655%3A460675..460947,W3110%3A460675..460947,DH10B%3A400006..400278,REL606%3A433506..433778,BW2952%3A363434..363706]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=363434&end=363706&gene=hupB&aa=mnksqlidkiaagadiskaaagraldaiiasvteslkegddvalvgfgtfavkeraartgrnpqtgkeitiaaakvpsfragkalkdavn]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hupB+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hupB]]&nbsp;&nbsp;


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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hupB

Gene Synonym(s)

ECK0434, b0440, JW0430, dpeA, hopD, dbhB, gsp*[1][2]

Product Desc.

DNA-binding protein HU-β, NS1 (HU-1)[2]; Transcriptional dual regulator HU-β, NS1 (HU-1)[3];

Component of HU Transcriptional dual regulator[3]

Histone-like protein HU-beta, HU-1[4]

Product Synonyms(s)

HU, DNA-binding transcriptional regulator, beta subunit[1], B0440[2][1], DpeA[2][1], HopD[2][1], DbhB[2][1], HupB[2][1] , dpeA, ECK0434, hopD, JW0430, b0440

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hupB[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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HU concentration in the cell determines the mechanical effect; flexible bends responsible for compaction occur at concentrations <100nM, while increased concentrations result in the formation of a rigid nucleoprotein filament and no significant concentration. Binds TrxA (Kumar, 2004).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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