hcaR:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2534, b2537, JW2521, yfhT, phdR''<ref name='LIB:Riley_2006'/>
''ECK2534, b2537, JW2521, yfhT, phdR''<ref name='LIB:Riley_2006'/>, phdR''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism<ref name='LIB:Riley_2006'/>, B2537<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism<ref name='LIB:Riley_2006'/>, B2537<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2534, JW2521, phdR, yfhT, b2537''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=hcaR&s=search PortEco search(hcaR)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=hcaR&loc=MG1655:2666918..2666028,W3110:2667552..2666662,REL606:2589595..2588705,DH10B:2758683..2757793,BW2952:2551833..2552723 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2551833&end=2552723&gene=hcaR&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcaR+AND+escherichia+coli Pubmed(hcaR)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hcaR Textpresso(hcaR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hcaR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7331]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003903&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hcaR&loc=MG1655%3A2666918..2666028,W3110%3A2667552..2666662,REL606%3A2589595..2588705,DH10B%3A2758683..2757793,BW2952%3A2551833..2552723]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2551833&end=2552723&gene=hcaR&aa=melrhlryfvavaqalnftraaeklhtsqpslssqirdlencvgvpllvrdkrkvaltaagecflqdalaileqaenaklrarkivqedrqltigfvpsaevnllpkvlpmfrlrqpdtlielvslittqqeekirrgeldvglmrhpvyspeidylelfdeplvvvlpvdhplahekeitaaqldgvnfvstdpvysgslapivkawfaqensqpnivqvatnilvtmnlvgmglgvtlipgymnnfntgqvvfrpiagnvpsiallmawkkgemkpalrdfiaivqerlasvta]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcaR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hcaR]]&nbsp;&nbsp;


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Latest revision as of 21:49, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hcaR

Gene Synonym(s)

ECK2534, b2537, JW2521, yfhT, phdR[1], phdR

Product Desc.

HcaR transcriptional dual regulator[2][3]

Transcriptional activator of the hca operon; inducd by 3-phenylpropionate and cinnamic acid; autoregulatory[4]

Product Synonyms(s)

DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism[1], B2537[2][1], PhdR[2][1], HcaR[2][1], YfhT[2][1] , ECK2534, JW2521, phdR, yfhT, b2537

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hcaR[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Hydrocinnamic acid is a synonym for 3-phenylpropionic acid. LysR family.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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