EcoliWiki: Difference between revisions
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[[Category:Databases]] | [[Category:Databases]] | ||
[[Category:Biology wikis]] | [[Category:Biology wikis]] | ||
[[Category: | [[Category:PortEco Partner]] | ||
[[Category:E. coli Databases]] | [[Category:E. coli Databases]] | ||
[[Category:IECA Portal]] | [[Category:IECA Portal]] | ||
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!align=left {{table heading style}} |What: | !align=left {{table heading style}} |What: | ||
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Wiki-based community annotation for ''E. coli'' K-12, as part of [http:// | Wiki-based community annotation for ''E. coli'' K-12, as part of [http://PortEco.org PortEco] | ||
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!align=left {{table heading style}} |Who: | !align=left {{table heading style}} |Who: | ||
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===Web Services/API=== | ===Web Services/API=== | ||
EcoliWiki provides REST web services as part of the | EcoliWiki provides REST web services as part of the PortEco Web Services infrastructure project (See: [http://128.10.4.23/index.php?option=com_wrapper&Itemid=217 PortEco Workbench]). | ||
*keyword - currently searches based on a single keyword | *keyword - currently searches based on a single keyword | ||
*gene - prototype to extract gene details from the wiki | *gene - prototype to extract gene details from the wiki | ||
Revision as of 15:54, 30 June 2011
You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.
| Link/URL: | |
|---|---|
| What: |
Wiki-based community annotation for E. coli K-12, as part of PortEco |
| Who: |
Jim Hu, Texas A&M University |
| Updates: |
As edited |
| Upcoming events: | |
| Web Services: |
REST services available |
| edit table |
About EcoliWiki
EcoliWiki is a wiki-based system for finding, editing, and adding information about E. coli K-12 and other model organism strains of E. coli. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements.
Content
Most of the E. coli information was initially seeded with a subset of information from parsing EcoCyc data dumps. For phage λ and the F plasmid, Genbank accessions were converted to GFF, which was parsed into the appropriate tables. Other sources of content include:
- user additions
- monthly addition of annotations from EcoCyc
- structural data from the PDB
- domains and motif information from InterPro
- various databases including EcoGene, RegulonDB, Genbank, GenoBase, ASAP
- many many scientific papers
Quickview
Gene Product Page
Expression Pages
Using EcoliWiki
View a list of all pages in the "Help" namespace.
Browsing
Searching
Technology
Statistics
Ecoliwiki is run off of Mediawiki version 1.43.11 and currently has 167,280 pages. You can view other statistics on Special:Statistics.
Web Services/API
EcoliWiki provides REST web services as part of the PortEco Web Services infrastructure project (See: PortEco Workbench).
- keyword - currently searches based on a single keyword
- gene - prototype to extract gene details from the wiki
- is_edited - shows numbers of human revisions to EcoliWiki pages.
For more detail about the EcoliWiki web services, see Help:Web Services.