bamE:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
update QV table
BatchPageMover script.
Line 10: Line 10:
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|smpA}}{{Tab|Gene|smpA}}{{Tab|Gene Product(s)|smpA}}{{Tab|Expression|smpA}}{{Tab|Evolution|smpA}}{{Tab|On One Page|smpA}}{{TabsBottom}}
{{Tab On|Quickview|bamE}}{{Tab|Gene|bamE}}{{Tab|Gene Product(s)|bamE}}{{Tab|Expression|bamE}}{{Tab|Evolution|bamE}}{{Tab|On One Page|bamE}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
Line 29: Line 29:
!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''smpA''  
''bamE''  
|-
|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK2613, b2617, JW2598, smqA, bamE ''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>
''ECK2613, b2617, JW2598, smqA, bamE ''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>, smpA product
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 56: Line 56:
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:smpA|smpA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:bamE|bamE]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
Line 64: Line 64:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://ecoliwiki.net/tools/display_dna.php?gene=smpA&loc=MG1655:2751627..2751968,W3110:2752261..2752602,DH10B:2843392..2843733,REL606:2675089..2675241 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2675089&end=2675241&gene=smpA&aa=msdpfgtntwfyvfrqqpghegvtqqtltltfnssgvltnidnkpalsgn Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=smpA+AND+escherichia+coli Pubmed(smpA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=smpA Textpresso(smpA)]
[http://ecoliwiki.net/tools/display_dna.php?gene=bamE&loc=MG1655:2751627..2751968,W3110:2752261..2752602,DH10B:2843392..2843733,REL606:2675089..2675241 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2675089&end=2675241&gene=bamE&aa=msdpfgtntwfyvfrqqpghegvtqqtltltfnssgvltnidnkpalsgn Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bamE+AND+escherichia+coli Pubmed(bamE)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=bamE Textpresso(bamE)]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Revision as of 19:31, 2 March 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

bamE

Gene Synonym(s)

ECK2613, b2617, JW2598, smqA, bamE [1][2], smpA product

Product Desc.

SmpA small membrane protein A[3][4] Component of Outer Membrane Protein Assembly Complex[4]

Stabilizes BamABCD OM biogenesis complex; member of a BamABCDSmpA multiprotein complex; probable lipoprotein, Cys conserved[2]

Product Synonyms(s)

small membrane lipoprotein[1], B2617[3][1], SmqA[3][1], SmpA[3][1], BamE [2]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): bamE[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(bamE)    Textpresso(bamE)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

A consensus has been reached for renaming the genes that encode components of the outer membrane β-barrel assembly machine, (formerly known as the YaeT complex of E. coli or the Omp85 complex of N. meningitidis). The new designation for this multi-component structure is the Bam complex (for beta-barrel assembly machine).

The Bam complex in E. coli consists of BamA (YaeT), BamB (YfgL), BamC (NlpB), BamD (YfiO), and BamE (SmpA). Letters have been assigned on the basis of molecular weight, from highest to lowest [2].

[back to top]


smpA mutants are sensitive to rifampin, cholate, and SDS/EDTA, indicating an OM defect (Sklar, 2007). smpA bamB double mutant is non-viable (Sklar, 2007). SmpA is homologous to P. aeruginosa OmlA. First 19 aa are predicted to be a type II signal peptide.[2]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=bamE:Quickview&oldid=1061254"