ynfE:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ynfE''  
''ynfE''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1582, b1587, JW1579''<ref name='LIB:Riley_2006'/>
''ECK1582, b1587, JW1579''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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oxidoreductase subunit paralog of DmsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
oxidoreductase subunit paralog of DmsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Putative periplasmic reductase, function unknown<ref name='LIB:EcoGene'/>
Putative periplasmic reductase, function unknown<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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oxidoreductase subunit<ref name='LIB:Riley_2006'/>, B1587<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YnfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
oxidoreductase subunit<ref name='LIB:Riley_2006'/>, B1587<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YnfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ynfEFGH-dmsD|ynfEFGH-dmsD]]<ref name='LIB:EcoCyc10.6'/>, ynfEFGHI  
transcription unit(s): [[:Category:Txn_unit:ynfEFGH-dmsD|ynfEFGH-dmsD]]<ref name='LIB:EcoCyc10.6'/>, ynfEFGHI  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ynfE&loc=MG1655:1656093..1658519,W3110:1659783..1662209,DH10B:1747054..1749480,REL606:1635264..1637690 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1635264&end=1637690&gene=ynfE&aa=msknermvgisrrtlvkstaigslalaaggfslpftlrnaaaavqqarekvvwgacsvncgsrcalrlhvkdnevtwvetdntgsdeygnhqvraclrgrsirrrinhpdrlnypmkrvgkrgegkferiswdealdtiasslkktveqygneavyiqyssgivggnmtrsspsasavkrlmncyggslnqygsystaqiscampytygsndgnsttdiensklvvmfgnnpaetrmsgggityllekareksnakmividprytdtaagredewlpirpgtdaalvagiawvlinenlvdqpfldkycvgydektlpadapknghykayilgegddktaktpqwasqitgipedriiklareigtakpayicqgwgpqrqangeltaraiamlpiltgnvgisggnsgarestytitierlpvldnpvktsiscfswtdaidhgpqmtairdgvrgkdkldvpikfiwnyagntlvnqhsdinktheilqdeskcemivvienfmtssakyadillpdlmtveqediipndyagnmgyliflqpvtsekferkpiywilsevakrlgpdvyqkftegrtqeqwlqhlyakmlakdpalpsydelkkmgiykrkdpnghfvaykafrddpeanplktpsgkieiyssrlaeiartwelekdevisplpvyastfegwnsperrtfplqlfgfhyksrthstygnidllkaacrqevwinpidaqkrgiangdmvrvfnhrgevrlpakvtprilpgvsamgqgawheanmsgdkidhggcvntlttlrpsplakgnpqhtnlveieki Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ynfE+AND+escherichia+coli Pubmed(ynfE)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ynfE Textpresso(ynfE)]


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Revision as of 22:52, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ynfE

Gene Synonym(s)

ECK1582, b1587, JW1579[1]

Product Desc.

oxidoreductase subunit paralog of DmsA[2][3];

Component of dimethyl sulfoxide reductase paralogue[3]

Putative periplasmic reductase, function unknown[4]

Product Synonyms(s)

oxidoreductase subunit[1], B1587[2][1], YnfE[2][1]

Function from GO

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ynfEFGH-dmsD[2], ynfEFGHI

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ynfE)    Textpresso(ynfE)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


DmsA and YnfE are paralogs that intefere with YnfFGH assembly. AFMB Structural Genomics target No. (http://afmb.cnrs-mrs.fr/article171.html). Verified Tat substrate: YnfE has a Tat-only (Class I) predicted 42 aa signal peptide (Tullman-Ercek, 2007).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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