ygeR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ygeR'' | ''ygeR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2861, b2865, JW2833''<ref name='LIB:Riley_2006'/> | ''ECK2861, b2865, JW2833''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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putative lipoprotein<ref name='LIB:EcoCyc10.6'/>; putative lipoprotein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/> | putative lipoprotein<ref name='LIB:EcoCyc10.6'/>; putative lipoprotein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/> | ||
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Novel lipoprotein, function unknown, metalloprotease homolog; M23 family<ref name='LIB:EcoGene'/> | Novel lipoprotein, function unknown, metalloprotease homolog; M23 family<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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Tetratricopeptide repeat transcriptional regulator<ref name='LIB:Riley_2006'/>, B2865<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgeR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | Tetratricopeptide repeat transcriptional regulator<ref name='LIB:Riley_2006'/>, B2865<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgeR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0000920 cell separation during cytokinesis ([http://www.geneontology.org/GO.evidence.shtml IGI]) | |||
* GO:0001896 autolysis ([http://www.geneontology.org/GO.evidence.shtml IGI]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ygeR|ygeR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ygeR|ygeR]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ygeR&loc=MG1655:2997913..2997158,W3110:2998547..2997792,DH10B:3091783..3091028,REL606:2885646..2884891 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2885646&end=2884891&gene=ygeR&aa=mffkrgkilsagrlnkkslgivmllsvglllagcsgskssdtgtysgsvytvkrgdtlyrisrttgtsvkelarlngisppytievgqklklggaksssitrkstaksttktasvtpssavpksswppvgqrcwlwpttgkvimpystadggnkgidisaprgtpiyaagagkvvyvgnqlrgygnlimikhsedyitayahndtmlvnngqsvkagqkiatmgstdaasvrlhfqiryrataidplrylppqgskpkc Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygeR+AND+escherichia+coli Pubmed(ygeR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ygeR Textpresso(ygeR)] | |||
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Revision as of 23:03, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ygeR |
|---|---|
| Gene Synonym(s) |
ECK2861, b2865, JW2833[1] |
| Product Desc. |
putative lipoprotein[2]; putative lipoprotein; predicted DNA-binding transcriptional regulator[3] Novel lipoprotein, function unknown, metalloprotease homolog; M23 family[4] |
| Product Synonyms(s) |
Tetratricopeptide repeat transcriptional regulator[1], B2865[2][1], YgeR[2][1] |
| Function from GO |
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
nlpD, ygeR, yebA and envC are paralogs. ygeR is a backbone gene flanking the insertion of the type three secretion system pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving a 10 kb remnant. First 25 aa are a type II signal peptide.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.