yfiD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''yfiD'' | ''yfiD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2577, b2579, JW2563''<ref name='LIB:Riley_2006'/> | ''ECK2577, b2579, JW2563''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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stress-induced alternate pyruvate formate-lyase subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | stress-induced alternate pyruvate formate-lyase subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Autonomous glycine radical cofactor; can reactivate pyruvate formate lyase after oxidative stress; induced by low pH or propionate; pyruvate formate lyase homolog, "spare part" for PFL<ref name='LIB:EcoGene'/> | Autonomous glycine radical cofactor; can reactivate pyruvate formate lyase after oxidative stress; induced by low pH or propionate; pyruvate formate lyase homolog, "spare part" for PFL<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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pyruvate formate lyase subunit<ref name='LIB:Riley_2006'/>, B2579<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | pyruvate formate lyase subunit<ref name='LIB:Riley_2006'/>, B2579<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yfiD|yfiD]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yfiD|yfiD]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=yfiD&loc=MG1655:2714471..2714088,W3110:2715105..2714722,REL606:2637942..2637559,DH10B:2806236..2805853 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2806236&end=2805853&gene=yfiD&aa=mitgiqitkaanddllnsfwlldsekgearcivakagyaedevvavsklgdieyrevpvevkpevrveggqhlnvnvlrretledavkhpekypqltirvsgyavrfnsltpeqqrdviartftesl Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yfiD+AND+escherichia+coli Pubmed(yfiD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yfiD Textpresso(yfiD)] | |||
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Revision as of 23:04, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
yfiD |
|---|---|
| Gene Synonym(s) |
ECK2577, b2579, JW2563[1] |
| Product Desc. |
stress-induced alternate pyruvate formate-lyase subunit[2][3] Autonomous glycine radical cofactor; can reactivate pyruvate formate lyase after oxidative stress; induced by low pH or propionate; pyruvate formate lyase homolog, "spare part" for PFL[4] |
| Product Synonyms(s) | |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
A yfiD mutant excretes increased levels of organic acids when grown under oxygen-starved conditions. Radical activation mediated by PflA; deactivation not mediated by AdhE. Regulated by FNR, ArcA and PdhR. HT_Cmplx8_Cyt: YfiD+PflB. HT_Cmplx9_Cyt: YfiD+TdcE.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.