ybaZ:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ybaZ'' | ''ybaZ'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0448, b0454, JW0444''<ref name='LIB:Riley_2006'/> | ''ECK0448, b0454, JW0444''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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putative methyltransferase<ref name='LIB:EcoCyc10.6'/>; predicted methyltransferase<ref name='LIB:EcoCyc11.1'/> | putative methyltransferase<ref name='LIB:EcoCyc10.6'/>; predicted methyltransferase<ref name='LIB:EcoCyc11.1'/> | ||
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Binds DNA with O(6)-meG or an abasic site; physiological role unknown<ref name='LIB:EcoGene'/> | Binds DNA with O(6)-meG or an abasic site; physiological role unknown<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted methyltransferase<ref name='LIB:Riley_2006'/>, YbaZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0454<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted methyltransferase<ref name='LIB:Riley_2006'/>, YbaZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0454<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ybaZ|ybaZ]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ybaZ|ybaZ]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ybaZ&loc=MG1655:475595..475206,W3110:475595..475206,DH10B:414926..414537,REL606:448438..448049 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=448438&end=448049&gene=ybaZ&aa=mlvscamrlhsgvfpdyaeklpqeekmekedsfpqrvwqivaaipegyvttygdvaklagspraarqvggvlkrlpegstlpwhrvvnrhgtisltgpdlqrqrqallaegvmvsgsgqidlqryrwny Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybaZ+AND+escherichia+coli Pubmed(ybaZ)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ybaZ Textpresso(ybaZ)] | |||
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Revision as of 23:21, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ybaZ |
|---|---|
| Gene Synonym(s) |
ECK0448, b0454, JW0444[1] |
| Product Desc. |
putative methyltransferase[2]; predicted methyltransferase[3] Binds DNA with O(6)-meG or an abasic site; physiological role unknown[4] |
| Product Synonyms(s) | |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
YbaZ is homologous to methylated-DNA--protein-cysteine methyltransferases Ada and Ogt, but lacks the active site cysteine. YbaZ binds O(6)-alkylguanine residues in DNA and blocks alkyltransferase action; YbaZ does not remove methyl groups from O(6)-methylguanine-containing DNA nor does it have glycosylase or endonuclease activity (Margison, 2007). YbaZ preferentially binds DNA with an abasic site, has base-flipping activity, and binds HelD (Chen, 2008).[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.