yafO:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''yafO'' | ''yafO'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0234, b0233, JW0223''<ref name='LIB:Riley_2006'/> | ''ECK0234, b0233, JW0223''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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conserved protein with a possible role in spontaneous mutagenesis; toxin of a putative toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | conserved protein with a possible role in spontaneous mutagenesis; toxin of a putative toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Possible toxin, function unknown<ref name='LIB:EcoGene'/> | Possible toxin, function unknown<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted toxin of the YafO-YafN toxin-antitoxin system<ref name='LIB:Riley_2006'/>, B0233<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YafO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted toxin of the YafO-YafN toxin-antitoxin system<ref name='LIB:Riley_2006'/>, B0233<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YafO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yafN|yafN]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yafN|yafN]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=yafO&loc=MG1655:252301..252699,W3110:252301..252699,DH10B:226405..226803,REL606:256864..257262 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=256864&end=257262&gene=yafO&aa=mrvfktklirlqltaeeldaltadfisykrdgvlpdifgrdalyddsftwplikfervahihlanennpfppqlrqfsrtndeahlvycqgafdeqawlliailkpephklardnnqmhkigkmaeafrmrf Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yafO+AND+escherichia+coli Pubmed(yafO)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yafO Textpresso(yafO)] | |||
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Revision as of 23:22, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
yafO |
|---|---|
| Gene Synonym(s) |
ECK0234, b0233, JW0223[1] |
| Product Desc. |
conserved protein with a possible role in spontaneous mutagenesis; toxin of a putative toxin-antitoxin pair[2][3] Possible toxin, function unknown[4] |
| Product Synonyms(s) |
predicted toxin of the YafO-YafN toxin-antitoxin system[1], B0233[2][1], YafO[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
LexA regulon. dinB-yafNOP operon. The phenotype of some dinB alleles to reduce spontaneous mutations may be due to polarity effects on yafO. Overexpression causes filamentous biofilm formation and increased CV staining. Overexpression also reported to inhibit growth (Brown, 2003). YafN may be antitoxin for possible toxin YafO.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.