sdhD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''sdhD'' | ''sdhD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0711, b0722, JW0712, dhsD, cybS''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ECK0711, b0722, JW0712, dhsD, cybS''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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succinate dehydrogenase membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | succinate dehydrogenase membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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Succinate dehydrogenase (SQR) hydrophobic subunit; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration<ref name='LIB:EcoGene'/> | Succinate dehydrogenase (SQR) hydrophobic subunit; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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succinate dehydrogenase, membrane subunit, binds cytochrome b556<ref name='LIB:Riley_2006'/>, B0722<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhsD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdhD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CybS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, small subunit of cytochrome b<sub>556</sub><ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | succinate dehydrogenase, membrane subunit, binds cytochrome b556<ref name='LIB:Riley_2006'/>, B0722<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhsD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdhD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CybS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, small subunit of cytochrome b<sub>556</sub><ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0009055 electron carrier activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
* GO:0020037 heme binding ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
'''Biological Process''' | |||
* GO:0009060 aerobic respiration ([http://www.geneontology.org/GO.evidence.shtml IEP]) | |||
* GO:0017004 cytochrome complex assembly ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:sdhDAB|sdhDAB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB | transcription unit(s): [[:Category:Txn_unit:sdhDAB|sdhDAB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=sdhD&loc=MG1655:754783..755130,W3110:755982..756329,DH10B:807375..807722,REL606:736351..736698 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=736351&end=736698&gene=sdhD&aa=mvsnasalgrngvhdfilvrataivltlyiiymvgffatsgeltyevwigffasaftkvftllalfsilihawigmwqvltdyvkplalrlmlqlvivvalvvyviygfvvvwgv Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sdhD+AND+escherichia+coli Pubmed(sdhD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=sdhD Textpresso(sdhD)] | |||
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Revision as of 23:32, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
sdhD |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
succinate dehydrogenase membrane protein[2][3]; Component of membrane-bound subcomplex of succinate dehydrogenase[3]; succinate dehydrogenase[3] Succinate dehydrogenase (SQR) hydrophobic subunit; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration[4] |
| Product Synonyms(s) |
succinate dehydrogenase, membrane subunit, binds cytochrome b556[1], B0722[2][1], DhsD[2][1], SdhD[2][1], CybS[2][1], small subunit of cytochrome b556[2][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): sdhDAB[2], sdhCDAB-sucABCD[2], OP00142, sdhCDAB |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The sdhABCD operon is negatively regulated by ryhB RNA as part of indirect positive regulation by Fur.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.