rraA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rraA''  
''rraA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3921, b3929, JW3900, menG, yiiA, yiiV''<ref name='LIB:Riley_2006'/>
''ECK3921, b3929, JW3900, menG, yiiA, yiiV''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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ribonuclease E inhibitor protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
ribonuclease E inhibitor protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Protein inhibitor of RNase E, modulates global mRNA abundance; trimeric<ref name='LIB:EcoGene'/>
Protein inhibitor of RNase E, modulates global mRNA abundance; trimeric<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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ribonuclease E (RNase E) inhibitor protein<ref name='LIB:Riley_2006'/>, B3929<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YiiV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MenG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RraA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
ribonuclease E (RNase E) inhibitor protein<ref name='LIB:Riley_2006'/>, B3929<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YiiV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MenG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RraA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0006401 RNA catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0050790 regulation of catalytic activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008428 ribonuclease inhibitor activity ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rraA|rraA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rraA|rraA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rraA&loc=MG1655:4117353..4116868,W3110:3517351..3517836,DH10B:4217050..4216565 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4217050&end=4216565&gene=rraA&aa=mkydtselcdiyqedvnvveplfsnfggrasfggqiitvkcfedngllydlleqngrgrvlvvdgggsvrralvdaelarlavqneweglviygavrqvddleeldigiqamaaipvgaagegigesdvrvnfggvtffsgdhlyadntgiilsedpldie Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rraA+AND+escherichia+coli Pubmed(rraA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rraA Textpresso(rraA)]


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Revision as of 23:34, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rraA

Gene Synonym(s)

ECK3921, b3929, JW3900, menG, yiiA, yiiV[1]

Product Desc.

ribonuclease E inhibitor protein[2][3];

Component of ribonuclease E inhibitor protein A[3]

Protein inhibitor of RNase E, modulates global mRNA abundance; trimeric[4]

Product Synonyms(s)

ribonuclease E (RNase E) inhibitor protein[1], B3929[2][1], YiiV[2][1], MenG[2][1], RraA[2][1]

Function from GO

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rraA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rraA)    Textpresso(rraA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


rraA (menG) was previously, erroneously, reported to encode demethylmenaquinone methyltransferase, in Genbank U56082. UbiE performs this final step, converting demethylmenaquinone to menaquinone.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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