rhlE:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rhlE''  
''rhlE''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0786, b0797, JW0781''<ref name='LIB:Riley_2006'/>
''ECK0786, b0797, JW0781''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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DEAD-box-containing ATP-dependent RNA helicase family member<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
DEAD-box-containing ATP-dependent RNA helicase family member<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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DEAD-box protein family; ATP-dependent RNA helicase-like protein<ref name='LIB:EcoGene'/>
DEAD-box protein family; ATP-dependent RNA helicase-like protein<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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RNA helicase<ref name='LIB:Riley_2006'/>, B0797<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhlE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
RNA helicase<ref name='LIB:Riley_2006'/>, B0797<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhlE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0004004 ATP-dependent RNA helicase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
'''Biological Process'''
* GO:0042255 ribosome assembly ([http://www.geneontology.org/GO.evidence.shtml IGI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rhlE|rhlE]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rhlE|rhlE]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rhlE&loc=MG1655:830095..831459,W3110:831294..832658,DH10B:884023..885387,REL606:823497..824861 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=823497&end=824861&gene=rhlE&aa=msfdslglspdilravaeqgyreptpiqqqaipavlegrdlmasaqtgtgktagftlpllqhlitrqphakgrrpvraliltptrelaaqigenvrdyskylnirslvvfggvsinpqmmklrggvdvlvatpgrlldlehqnavkldqveilvldeadrmldmgfihdirrvltklpakrqnllfsatfsddikalaekllhnpleievarrntasdqvtqhvhfvdkkrkrellshmigkgnwqqvlvftrtkhganhlaeqlnkdgirsaaihgnksqgartraladfksgdirvlvatdiaargldieelphvvnyelpnvpedyvhrigrtgraaatgealslvcvdehkllrdiekllkkeipriaipgyepdpsikaepiqngrqqrggggrgqgggrgqqqprrgeggaksasakpaekpsrrlgdakpageqqrrrrprkpaaaq Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rhlE+AND+escherichia+coli Pubmed(rhlE)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rhlE Textpresso(rhlE)]


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Revision as of 00:24, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rhlE

Gene Synonym(s)

ECK0786, b0797, JW0781[1]

Product Desc.

DEAD-box-containing ATP-dependent RNA helicase family member[2][3]

DEAD-box protein family; ATP-dependent RNA helicase-like protein[4]

Product Synonyms(s)

RNA helicase[1], B0797[2][1], RhlE[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rhlE[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rhlE)    Textpresso(rhlE)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


rhlE is transiently after a cold shock, dependent on the presence of PNPase. RhlE binds RNaseE. RhlE forms degradosome.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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