xapR:Quickview: Difference between revisions

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{{Tab On|Quickview|xapR}}{{Tab|Gene|xapR}}{{Tab|Gene Product(s)|xapR}}{{Tab|Expression|xapR}}{{Tab|Evolution|xapR}}{{Tab|On One Page|xapR}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[xapR:Gene|''xapR]]'' (synonyms: ''ECK2399, b2405, JW2396, pndR, yfeB, pRndR'')<ref name='LIB:Riley_2006'/>
''xapR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[xapR:Gene_Product(s)|XapR product]]<ref name='LIB:Riley_2006'/>: DNA-binding transcriptional activator<ref name='LIB:Riley_2006'/>, B2405<ref name='LIB:EcoCyc10.6'/>, YfeB<ref name='LIB:EcoCyc10.6'/>, PndR<ref name='LIB:EcoCyc10.6'/>, XapR<ref name='LIB:EcoCyc10.6'/>
''ECK2399, b2405, JW2396, pndR, yfeB, pRndR''<ref name='LIB:Riley_2006'/>, pRndR''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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XapR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
XapR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Regulatory gene for xapAB<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA-binding transcriptional activator<ref name='LIB:Riley_2006'/>, B2405<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfeB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PndR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, XapR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2399, JW2396, pRndR, yfeB, b2405''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:xapR|xapR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:xapR|xapR]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=xapR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11146]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001130&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=xapR&loc=MG1655%3A2520499..2519615,W3110%3A2527923..2527039,DH10B%3A2612264..2611380,BW2952%3A2405420..2406304]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2405420&end=2406304&gene=xapR&aa=mervyrtdlkllryflavaeelhfgraaarlnmsqpplsihikelenqlgtqlfirhsrsvvlthagkilmeesrrllvnannvlarieqigrgeagrielgvvgtamwgrmrpvmrrflrenpnvdvlfrekmpamqmallerreldagiwrmatepptgftslrlhesaflvampeehhlssfstvplealrdeyfvtmppvytdwdflqrvcqqvgfspvvirevnepqtvlamvsmgigitliadsyaqmnwpgvifrplkqripadlyivyetqqvtpamvkllaaltq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=xapR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=xapR]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
LysR family.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
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Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

xapR

Gene Synonym(s)

ECK2399, b2405, JW2396, pndR, yfeB, pRndR[1], pRndR

Product Desc.

XapR transcriptional activator[2][3]

Regulatory gene for xapAB[4]

Product Synonyms(s)

DNA-binding transcriptional activator[1], B2405[2][1], YfeB[2][1], PndR[2][1], XapR[2][1] , ECK2399, JW2396, pRndR, yfeB, b2405

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): xapR[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


LysR family.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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