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{{Tab On|Quickview|hcaR}}{{Tab|Gene|hcaR}}{{Tab|Gene Product(s)|hcaR}}{{Tab|Expression|hcaR}}{{Tab|Evolution|hcaR}}{{Tab|On One Page|hcaR}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[hcaR:Gene|''hcaR]]'' (synonyms: ''ECK2534, b2537, JW2521, yfhT, phdR'')<ref name='LIB:Riley_2006'/>
''hcaR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[hcaR:Gene_Product(s)|HcaR product]]<ref name='LIB:Riley_2006'/>: DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism product, B2537 product, PhdR product, YfhT product
''ECK2534, b2537, JW2521, yfhT, phdR''<ref name='LIB:Riley_2006'/>, phdR''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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HcaR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
HcaR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Transcriptional activator of the hca operon; inducd by 3-phenylpropionate and cinnamic acid; autoregulatory<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism<ref name='LIB:Riley_2006'/>, B2537<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2534, JW2521, phdR, yfhT, b2537''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hcaR|hcaR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:hcaR|hcaR]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hcaR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7331]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003903&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hcaR&loc=MG1655%3A2666918..2666028,W3110%3A2667552..2666662,REL606%3A2589595..2588705,DH10B%3A2758683..2757793,BW2952%3A2551833..2552723]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2551833&end=2552723&gene=hcaR&aa=melrhlryfvavaqalnftraaeklhtsqpslssqirdlencvgvpllvrdkrkvaltaagecflqdalaileqaenaklrarkivqedrqltigfvpsaevnllpkvlpmfrlrqpdtlielvslittqqeekirrgeldvglmrhpvyspeidylelfdeplvvvlpvdhplahekeitaaqldgvnfvstdpvysgslapivkawfaqensqpnivqvatnilvtmnlvgmglgvtlipgymnnfntgqvvfrpiagnvpsiallmawkkgemkpalrdfiaivqerlasvta]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcaR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hcaR]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Hydrocinnamic acid is a synonym for 3-phenylpropionic acid.  LysR family.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hcaR

Gene Synonym(s)

ECK2534, b2537, JW2521, yfhT, phdR[1], phdR

Product Desc.

HcaR transcriptional dual regulator[2][3]

Transcriptional activator of the hca operon; inducd by 3-phenylpropionate and cinnamic acid; autoregulatory[4]

Product Synonyms(s)

DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism[1], B2537[2][1], PhdR[2][1], HcaR[2][1], YfhT[2][1] , ECK2534, JW2521, phdR, yfhT, b2537

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hcaR[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Hydrocinnamic acid is a synonym for 3-phenylpropionic acid. LysR family.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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