kdsB:Quickview: Difference between revisions

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|-
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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''kdsB''  
''kdsB''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0909, b0918, JW0901''<ref name='LIB:Riley_2006'/>
''ECK0909, b0918, JW0901''<ref name='LIB:Riley_2006'/>, JW0901''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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CPM-
CPM-
3-deoxy-manno-octulosonate cytidylyltransferase; LPS biosynthesis<ref name='LIB:EcoGene'/>
3-deoxy-manno-octulosonate cytidylyltransferase; LPS biosynthesis<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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3-deoxy-manno-octulosonate cytidylyltransferase<ref name='LIB:Riley_2006'/>, B0918<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''3-deoxy-manno-octulosonate cytidylyltransferase<ref name='LIB:Riley_2006'/>, B0918<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0909, JW0901, b0918''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ycaR|ycaR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ycaR|ycaR]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=kdsB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10519]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000512&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=kdsB&loc=MG1655%3A970075..970821,W3110%3A971274..972020,DH10B%3A1024003..1024749,REL606%3A987944..988690,BW2952%3A873043..873789]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=873043&end=873789&gene=kdsB&aa=msfvviiparyastrlpgkplvdingkpmivhvleraresgaeriivatdhedvaraveaaggevcmtradhqsgterlaevvekcafsddtvivnvqgdepmipatiirqvadnlaqrqvgmatlavpihnaeeafnpnavkvvldaegyalyfsratipwdrdrfaegletvgdnflrhlgiygyragfirryvnwqpsplehiemleqlrvlwygekihvavaqevpgtgvdtpedlervraemr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdsB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=kdsB]]&nbsp;&nbsp;


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Also known as CMP-KDO synthase(CKS). E. coli K-12 only has the L-CKS isozyme involved in LPS biosynthesis. The K-CKS isozyme KpsU is specific for K5 group II capsule biosynthesis , is 45% identical to KdsB, and has been characterized from E. coli K5 isolate #2980 (Genbank:X74567, UniProt:P42216; PDB:1H7E).<ref name='LIB:EcoGene'/>
Also known as CMP-KDO synthase(CKS). E. coli K-12 only has the L-CKS isozyme involved in LPS biosynthesis. The K-CKS isozyme KpsU is specific for K5 group II capsule biosynthesis , is 45% identical to KdsB, and has been characterized from E. coli K5 isolate #2980 (Genbank:X74567, UniProtKB:P42216; PDB:1H7E).<ref name='LIB:EcoGene'/>






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==References==
==References==
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Latest revision as of 03:07, 30 June 2019

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

kdsB

Gene Synonym(s)

ECK0909, b0918, JW0901[1], JW0901

Product Desc.

CPM- 3-deoxy-manno-octulosonate cytidylyltransferase; LPS biosynthesis[2]

Product Synonyms(s)

3-deoxy-manno-octulosonate cytidylyltransferase[1], B0918[3][1], KdsB[3][1] , ECK0909, JW0901, b0918

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycaR[3]

Regulation/Activity
Quick Links



        

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Notes

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Also known as CMP-KDO synthase(CKS). E. coli K-12 only has the L-CKS isozyme involved in LPS biosynthesis. The K-CKS isozyme KpsU is specific for K5 group II capsule biosynthesis , is 45% identical to KdsB, and has been characterized from E. coli K5 isolate #2980 (Genbank:X74567, UniProtKB:P42216; PDB:1H7E).[2]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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