gatR:Quickview: Difference between revisions

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{{Tab On|Quickview|gatR_2}}{{Tab|Gene|gatR_2}}{{Tab|Gene Product(s)|gatR_2}}{{Tab|Expression|gatR_2}}{{Tab|Evolution|gatR_2}}{{Tab|On One Page|gatR_2}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[gatR_2:Gene|''gatR_2]]'' (synonyms: ''gatR, ECK2083, b2087, JW5340, b2090, JW2074, b4498, JW5340+JW2074, gatR_1'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''gatR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[gatR_2:Gene_Product(s)|GatR product]]<ref name='LIB:EcoCyc10.6'/>: B2087 product, GatR_1 product, split galactitol utilization operon repressor, fragment 1 product, B2090 product, split galactitol utilization operon repressor, fragment 2 product
''Note that this is a pseudogene in K12 strains., ECK2083, JW2074, JW5340, b4498''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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negative DNA-binding transcriptional regulator of galactitol metabolism<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> GatR_2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
Note that this is a pseudogene in K12 strains.
 
negative DNA-binding transcriptional regulator of galactitol metabolism<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; GatR_2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:GatR transcriptional repressor|GatR transcriptional repressor]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:GatR transcriptional repressor|GatR transcriptional repressor]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''B2087<ref name='LIB:EcoCyc10.6'/>, GatR_1<ref name='LIB:EcoCyc10.6'/>, GatR<ref name='LIB:EcoCyc10.6'/>, split galactitol utilization operon repressor, fragment 1<ref name='LIB:EcoCyc10.6'/>, B2090<ref name='LIB:EcoCyc10.6'/>, split galactitol utilization operon repressor, fragment 2<ref name='LIB:EcoCyc10.6'/> , ECK2083, JW2074, JW5340, b4498''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:gatR_1|gatR_1]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:gatR_1|gatR_1]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=2&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12162]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002058&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=2&loc=MG1655%3A2168163..2167717,W3110%3A2172276..2171830,MG1655%3A2169757..2169419,W3110%3A2173870..2173532,MG1655%3A2169757..2167717,W3110%3A2173870..2171830]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2173870&end=2171830&gene=2&aa=mnsferrnkiiqlvneqgtvlvqdlagvfaaseatiradlrfleqkgvvtrfhggaakimsgnsetetqevgfkerfqlasapknriaqaavkmihegmtvildsgsttmliaeglmtaknitvitnslpaafalsenkditlvvcggtvrhktrsmhgsiaerslqdinadlmfvgadgidavngittfnegysisgamvtaankviavldsskfnrrgfnqvlpiekidiiitddavsevdklalqktrvklitv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=2+AND+gatR]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=2]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
This is a pseudogene in K12 strains.




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==References==
==References==
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<references/>
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Latest revision as of 21:56, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gatR

Gene Synonym(s)

Note that this is a pseudogene in K12 strains., ECK2083, JW2074, JW5340, b4498

Product Desc.

Note that this is a pseudogene in K12 strains.

negative DNA-binding transcriptional regulator of galactitol metabolism[1][2]; GatR_2[1][2];

Component of GatR transcriptional repressor[1][2]

Product Synonyms(s)

B2087[1], GatR_1[1], GatR[1], split galactitol utilization operon repressor, fragment 1[1], B2090[1], split galactitol utilization operon repressor, fragment 2[1] , ECK2083, JW2074, JW5340, b4498

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gatR_1[1]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


This is a pseudogene in K12 strains.



References

[back to top]


  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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