ydeK:Quickview: Difference between revisions

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{{Tab On|Quickview|ydeK}}{{Tab|Gene|ydeK}}{{Tab|Gene Product(s)|ydeK}}{{Tab|Expression|ydeK}}{{Tab|Evolution|ydeK}}{{Tab|On One Page|ydeK}}{{TabsBottom}}
{{Tab On|Quickview|ydeK}}{{Tab|Gene|ydeK}}{{Tab|Gene Product(s)|ydeK}}{{Tab|Expression|ydeK}}{{Tab|Evolution|ydeK}}{{Tab|On One Page|ydeK}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ydeK:Gene|''ydeK]]'' (synonyms: ''ECK1503, b1510, JW1503, orfT'')<ref name='LIB:Riley_2006'/>
''ydeK''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ydeK:Gene_Product(s)|YdeK product]]<ref name='LIB:Riley_2006'/>: predicted lipoprotein product, B1510 product, OrfT product
''ECK1503, b1510, JW1503, orfT''<ref name='LIB:Riley_2006'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted lipoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted lipoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Putative OM autotransporter adhesin, function unknown; AidA homolog<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted lipoprotein<ref name='LIB:Riley_2006'/>, B1510<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OrfT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ydeK|ydeK]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydeK|ydeK]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydeK&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11780]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001714&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydeK&loc=MG1655%3A1596110..1592133,W3110%3A1599800..1595823,DH10B%3A1685735..1681758,BW2952%3A1484192..1488169]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1484192&end=1488169&gene=ydeK&aa=mnriyrviwnctlqvfqacseltrragktstvnlrkssglttkfsrltlgvllalsgsasgaslevdndqitnidtdvaydaylvgwygtgvlnilaggnaslttittsviganedsegtvnvlggtwrlydsgnnarplnvgqsgtgtlnikqkghvdggylrlgsstggvgtvnvegedsvlttelfeigsygtgslnitdkgyvtssivailgyqagsngqvvvekggewliknndssiefqignqgtgeatiregglvtaentiiggnatgigtlnvqdqdsvitvrrlyngyfgngtvnisnnglinnkeyslvgvqdgshgvvnvtdkghwnflgtgeafryiyigdagdgelnvssegkvdsgiitagmketgtgnitvkdknsvitnlgtnlgydghgemnisnqglvvsnggsslgygetgvgnvsittggmwevnknvyttigvagvgnlnisdggkfvsqnitflgdkasgigtlnlmdatssfdtvginvgnfgsgivnvsngatlnstgygfiggnasgkgivnistdslwnlktsstnaqllqvgvlgtgelnittggivkardtqialndkskgdvrvdgqnslletfnmyvgtsgtgtltltnngtlnveggevylgvfepavgtlnigaahgeaaadagfitnatkvefglgegvfvfnhtnnsdagyqvdmlitgddkdgkvihdaghtvfnagntysgktlvndglltiashtadgvtgmgssevtianpgtldilastnsagdytltnalkgdglmrvqlsssdkmfgfthatgtefagvaqlkdstftlerdntaalthamlqsdsenttsvkvgeqsigglamnggtiifdtdipaatlaegyisvdtlvvgagdytwkgrnyqvngtgdvlidvpkpwndpmannplttlnllehddshvgvqlvkaqtvigsggsltlrdlqgdeveadktlhiaqngtvvaegdygfrlttapgnglyvnyglkalnihggqkltlaehggaygatadmsakiggegdlaintvrqvslsngqndyqgatyvqmgtlrtdadgalgntrelnisnaaivdlngstqtvetftgqmgstvlfkegaltvnkggisqgeltgggnlnvtggtlaieglnarynaltsispnaevsldntqglgrgniandglltlknvtgelrnsisgkgivsatartdveldgdnsrfvgqfnidtgsalsvneqknlgdasvinnglltisterswamthsisgsgdvtklgtgiltlnndsaayqgttdivggeiafgsdsainmasqhinihnsgvmsgnvttagdmnvmpgggtacr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydeK+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydeK]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Probable false positive lipoprotein prediction, Cys not conserved in other autotransporters.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ydeK

Gene Synonym(s)

ECK1503, b1510, JW1503, orfT[1]

Product Desc.

predicted lipoprotein[2][3]

Putative OM autotransporter adhesin, function unknown; AidA homolog[4]

Product Synonyms(s)

predicted lipoprotein[1], B1510[2][1], YdeK[2][1], OrfT[2][1]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydeK[2]

Regulation/Activity
Quick Links



        

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Notes

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Probable false positive lipoprotein prediction, Cys not conserved in other autotransporters.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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