adhP:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Update TableEdit tables.
touch
 
(8 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="F46abc01d02279"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46abc01d02279"  class=" tableEdit Evolution_homologs_table"   
|-
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-  
|-  
Line 113: Line 113:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="R46abc02342ebb"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46abc02342ebb"  class=" tableEdit Gene_accessions_table"   
|-
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00107 PFAM:PF00107]
[http://pfam.janelia.org/family/PF00107 PF00107 Zinc-binding dehydrogenase]
|
|
   
   
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50129 SUPERFAMILY:50129]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
|
|-
|
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11695:SF295 PTHR11695:SF295]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF08240 PF08240  Alcohol dehydrogenase GroES-like domain]
|
|-
|
[[EcoCyc]]
|
EcoCyc:G6775
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG12622
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120003364
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB2506
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0004928
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 142: Line 205:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="T46a80a3a8501c"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46a80a3a8501c"  class=" tableEdit Links_table"   
|-
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Caenorhabditis briggsae

  • WBGene00041628 (score: 1.000; bootstrap: 99%)
  • WBGene00041627 (score: 0.426)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010790 (score: 1.000; bootstrap: 99%)
  • WBGene00010791 (score: 0.668)
  • WBGene00017060 (score: 0.514)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017957 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YMR303C (score: 1.000; bootstrap: 99%)
  • YOL086C (score: 0.913)
  • YBR145W (score: 0.728)
  • YMR083W (score: 0.724)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC13B111 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ADHP

From SHIGELLACYC

E. coli O157

ADHP

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00107 Zinc-binding dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:50129

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR11695:SF295

Pfam (EcoliWiki Page)

PF08240 Alcohol dehydrogenase GroES-like domain

EcoCyc

EcoCyc:G6775

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12622

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003364

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2506

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004928

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=adhP:Evolution&oldid=1389959"