pliG:Quickview: Difference between revisions

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{{Tab On|Quickview|ycgK}}{{Tab|Gene|ycgK}}{{Tab|Gene Product(s)|ycgK}}{{Tab|Expression|ycgK}}{{Tab|Evolution|ycgK}}{{Tab|On One Page|ycgK}}{{TabsBottom}}
{{Tab On|Quickview|pliG}}{{Tab|Gene|pliG}}{{Tab|Gene Product(s)|pliG}}{{Tab|Expression|pliG}}{{Tab|Evolution|pliG}}{{Tab|On One Page|pliG}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ycgK:Gene|''ycgK]]'' (synonyms: ''ECK1166, b1178, JW1167'')<ref name='LIB:Riley_2006'/>
''pliG''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ycgK:Gene_Product(s)|YcgK product]]<ref name='LIB:Riley_2006'/>: predicted protein product, B1178 product
''ycgK, ECK1166, b1178, JW1167''<ref name='LIB:Riley_2006'/>, JW1167''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Secreted protein, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted protein<ref name='LIB:Riley_2006'/>, YcgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1178<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1166, JW1167, ycgK, b1178''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ycgK|ycgK]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ycgK|ycgK]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=pliG&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6615]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003210&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=pliG&loc=MG1655%3A1226695..1226294,W3110%3A1229049..1228648,DH10B%3A1266936..1266535,REL606%3A1227633..1227232,BW2952%3A1115015..1115416]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1115015&end=1115416&gene=pliG&aa=mkiksirkavlllalltstsfaagknvnvefrkghssaqysgeikgydydtytfyakkgqkvhvsisnegadtylfgpgiddsvdlsryspeldshgqyslpasgkyelrvlqtrndarknktkkynvdiqik]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pliG+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=pliG]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
First 22 aa are predicted to be a type I signal peptide. YcgK has an Ig-like domain: pfam PF004151 aligns to  residues 48-130.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

pliG

Gene Synonym(s)

ycgK, ECK1166, b1178, JW1167[1], JW1167

Product Desc.

predicted protein[2][3]

Secreted protein, function unknown[4]

Product Synonyms(s)

predicted protein[1], YcgK[2][1], B1178[2][1] , ECK1166, JW1167, ycgK, b1178

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycgK[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


First 22 aa are predicted to be a type I signal peptide. YcgK has an Ig-like domain: pfam PF004151 aligns to residues 48-130.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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