sroH:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
To make the tables.
 
touch
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
__NOTOC__
<!--
<!--
***************************************************************************************************************************************************
***************************************************************************************************************************************************
Line 9: Line 10:
***************************************************************************************************************************************************
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{TabsTop}}
{{Tab|Quickview|sroH}}{{Tab|Gene|sroH}}{{Tab|Gene Product(s)|sroH}}{{Tab On|Expression|sroH}}{{Tab|Evolution|sroH}}{{Tab|On One Page|sroH}}{{TabsBottom}}
{{Tab|Quickview|_sroH}}{{Tab|Gene|_sroH}}{{Tab|Gene Product(s)|_sroH}}{{Tab On|Expression|_sroH}}{{Tab|Evolution|_sroH}}{{Tab|On One Page|_sroH}}{{TabsBottom}}
{|
{|
|-  
|-  
Line 22: Line 23:
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
</noinclude>
==Overview==
===Overview===
{{Expression_overview_placeholder}}




==Cellular Levels==
==Intracellular Levels==
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.105089.L49c0385a34ad5-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.E4a82e947512f6-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 36: Line 35:
*  
*  
****************************************************************************************** -->{{Help Cellular levels}}
****************************************************************************************** -->{{Help Cellular levels}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E4a82e947512f6"  class=" tableEdit MoleculesPerCellTable"   
|- align='left' bgcolor='#CCCCFF'
|- align='left' bgcolor='#CCCCFF'
!|Molecule!!Organism or Strain!!Cellular level!!Units!!Medium!!Temperature °C!!Other (e.g. anaerobic)!!Growth rate!!Assay used!!Notes!!Reference(s)
!|Molecule!!Organism or Strain!!Value!!Units!!Experimental Conditions!!Assay used!!Notes!!Reference(s)


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.105089.L49c0385a34ad5&page=105089&pagename={{FULLPAGENAMEE}}&type=0&template=MoleculesPerCellTable edit table] || || || || || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165312.E4a82e947512f6&page=165312&pagename={{FULLPAGENAMEE}}&type=0&template=MoleculesPerCellTable edit table]</span> || || || || || || ||
|}
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.105089.L49c0385a34ad5-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.E4a82e947512f6--></protect>


===Notes===
===Notes===
Line 52: Line 51:
{|{{Prettytable}}
{|{{Prettytable}}
|-
|-
|<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.I46b255ff314af-->
|<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.K4a82e94756fbe-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 59: Line 58:
*  
*  
****************************************************************************************** -->{{expression_transcription_help}}
****************************************************************************************** -->{{expression_transcription_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K4a82e94756fbe"  class=" tableEdit Expression_operons_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Transcription unit(s)
!|Transcription unit(s)


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.105089.I46b255ff314af&page=105089&pagename={{FULLPAGENAMEE}}&type=&template=Expression_operons_table edit table]
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165312.K4a82e94756fbe&page=165312&pagename={{FULLPAGENAMEE}}&type=0&template=Expression_operons_table edit table]</span>
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.I46b255ff314af-->||{{RegulonDBfig|ECK120002647.jpg|SROH}}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.K4a82e94756fbe--></protect>
|}
|}
<!--Transcription_notes--></protect>
<!--Transcription_notes--></protect>
===Notes===
===Notes===
{{Expression_transcription_placeholder}}
 


==Translation and Regulation of Translation==
==Translation and Regulation of Translation==
{{BacktoTop}}
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|4188490|4188530|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
<protect>
<!--Translation_notes--></protect>
<!--Translation_notes--></protect>
===Notes===
===Notes===
{{Expression_translation_placeholder}}
 


==Turnover and Regulation of Turnover==
==Turnover and Regulation of Turnover==
Line 84: Line 82:


===Notes===
===Notes===
{{Expression_turnover_placeholder}}
 


==Experimental==
==Experimental==
Line 90: Line 88:
<protect>
<protect>
<big>'''Mutations Affecting Expression'''</big>
<big>'''Mutations Affecting Expression'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.B46ad39964e0ed-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.C4a82e9475825a-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 97: Line 95:
*  
*  
****************************************************************************************** -->{{Expression_allele_table_help}}
****************************************************************************************** -->{{Expression_allele_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C4a82e9475825a"  class=" tableEdit Expression_allele_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele Name!!Mutation!!Phenotype!!Reference
!|Allele Name!!Mutation!!Phenotype!!Reference


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.105089.B46ad39964e0ed&page=105089&pagename={{FULLPAGENAMEE}}&type=&template=Expression_allele_table edit table] || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165312.C4a82e9475825a&page=165312&pagename={{FULLPAGENAMEE}}&type=0&template=Expression_allele_table edit table]</span> || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.B46ad39964e0ed-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.C4a82e9475825a--></protect>
 


<big>'''Expression Studies'''</big>
<big>'''Expression Studies'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.T46ad3996d9142-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.E4a82e947593b9-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 115: Line 112:
*  
*  
****************************************************************************************** -->{{Expression_studies_table_help}}
****************************************************************************************** -->{{Expression_studies_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E4a82e947593b9"  class=" tableEdit Expression_studies_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Type!!Reference!!Notes
!|Type!!Reference!!Notes


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.105089.T46ad3996d9142&page=105089&pagename={{FULLPAGENAMEE}}&type=&template=Expression_studies_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165312.E4a82e947593b9&page=165312&pagename={{FULLPAGENAMEE}}&type=0&template=Expression_studies_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.T46ad3996d9142-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.E4a82e947593b9--></protect>
 


<big>'''Expression Resources'''</big>
<big>'''Expression Resources'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.B46ad39976fd45-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.Z4a82e9475a5a9-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 133: Line 129:
*  
*  
****************************************************************************************** -->{{Expression_resource_table_help}}
****************************************************************************************** -->{{Expression_resource_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z4a82e9475a5a9"  class=" tableEdit Expression_resource_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Resource Name!!Resource Type!!Description!!Source!!Notes
!|Resource Name!!Resource Type!!Description!!Source!!Notes


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.105089.B46ad39976fd45&page=105089&pagename={{FULLPAGENAMEE}}&type=&template=Expression_resource_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165312.Z4a82e9475a5a9&page=165312&pagename={{FULLPAGENAMEE}}&type=0&template=Expression_resource_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.B46ad39976fd45-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.Z4a82e9475a5a9--></protect>
 
<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
===Notes===
===Notes===




==Accessions Related to ''sroH'' Expression==
==Accessions Related to ''_sroH'' Expression==
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.A46ad3998092d2-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.A4a82e9475b766-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 155: Line 150:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A4a82e9475b766"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
EcoCyc:G0-9388
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG31182
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120002647
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G0-9388 EcoCyc:G0-9388]
ASAP:
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.105089.A46ad3998092d2&page=105089&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165312.A4a82e9475b766&page=165312&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.A46ad3998092d2-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.A4a82e9475b766--></protect>
 
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
Line 177: Line 199:
==Links==
==Links==
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.Q46ad3998ac56a-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.Q4a82e9475c907-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 184: Line 206:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q4a82e9475c907"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.105089.Q46ad3998ac56a&page=105089&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.165312.Q4a82e9475c907&page=165312&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.105089.Q46ad3998ac56a-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.165312.Q4a82e9475c907--></protect>


<noinclude>
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references />
<references/>
__NOTOC__
 
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:40, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Intracellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)


Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

|} </protect>

Notes

Translation and Regulation of Translation

[back to top]



Notes

Turnover and Regulation of Turnover

</protect>

Notes

Experimental

[back to top]


Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies

See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes


Expression Resources

See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes


Notes

Accessions Related to _sroH Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-9388

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG31182

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002647

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]