puuE:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00202 PFAM:PF00202]
[http://pfam.janelia.org/family/PF00202 PF00202 Aminotransferase class-III]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11986:SF17 PTHR11986:SF17]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53383 SUPERFAMILY:53383]
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[[EcoCyc]]
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EcoCyc:G6646
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13187
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003241
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2979
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0004380
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:32, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027287 (score: 1.000; bootstrap: 98%)
  • ENSANGP00000015566 (score: 0.137)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037892 (score: 1.000; bootstrap: 97%)
  • WBGene00033756 (score: 0.075)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020139 (score: 1.000; bootstrap: 95%)
  • WBGene00020382 (score: 0.073)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000027717 (score: 1.000; bootstrap: 95%)
  • ENSCAFP00000016665 (score: 0.116)
  • ENSCAFP00000000346 (score: 0.099)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050913-100 (score: 1.000; bootstrap: 98%)
  • ZDB-CDNA-050612-172 (score: 1.000; bootstrap: 98%)
  • ZDB-CDNA-040425-2065 (score: 0.117)
  • ZDB-GENE-040426-1133 (score: 0.117)
  • ZDB-CDNA-051127-18 (score: 0.101)
  • ZDB-GENE-051127-33 (score: 0.101)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037186 (score: 1.000; bootstrap: 95%)
  • FBgn0036381 (score: 0.115)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10859-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008293 (score: 1.000; bootstrap: 46%)

From Inparanoid:20070104

Mus musculus

  • MGI:2146052 (score: 1.000; bootstrap: 99%)
  • MGI:1919010 (score: 0.072)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC10397c (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000160485 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000164668 (score: 0.102)
  • NEWSINFRUP00000155980 (score: 0.100)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014411001 (score: 1.000; bootstrap: 99%)
  • GSTENP00019899001 (score: 0.111)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000035868 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GOAG

From SHIGELLACYC

E. coli O157

GOAG

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00202 Aminotransferase class-III

Panther (EcoliWiki Page)

PTHR11986:SF17

Superfamily (EcoliWiki Page)

SUPERFAMILY:53383

EcoCyc

EcoCyc:G6646

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13187

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003241

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2979

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004380

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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