Helical Wheel Projection: Difference between revisions
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php |
|||
| (5 intermediate revisions by 3 users not shown) | |||
| Line 1: | Line 1: | ||
{{Pagetop}}<br /> | {{Pagetop}}<br /> | ||
{{See|Help:Bioinformatics Tools|tools}} | {{See|Help:Bioinformatics Tools|tools}} | ||
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164938.X4a492c9e5ad7b--> | |||
<!-- | |||
****************************************************************************************** | |||
* | |||
* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | |||
* | |||
****************************************************************************************** --> | |||
{| {{Prettytable}} width='30%' align="right" id="X4a492c9e5ad7b" class=" tableEdit Biotools" | |||
|- | |||
!align=left {{table heading style}} |Link/URL: | |||
|| | |||
See Links Section | |||
|- | |||
!align=left {{table heading style}} |What: | |||
|| | |||
Visualization of amino acids in an alpha helix viewed from the N or C terminus. | |||
|- | |||
!align=left {{table heading style}} |Who: | |||
|| | |||
|- class="tableEdit_footer" | |||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164938.X4a492c9e5ad7b&page=164938&pagename={{FULLPAGENAMEE}}&type=1&template=Biotools edit table]</span> || | |||
|} | |||
<!--box uid=63ce1649aab8b3180235b0af7618f667.164938.X4a492c9e5ad7b--></protect> | |||
== Short Description == | == Short Description == | ||
{{UserContentHelp}} | {{UserContentHelp}} | ||
[[Image:Wheel.png|A helical wheel generated by wheel.pl|thumb| | [[Image:Wheel.png|A helical wheel generated by wheel.pl|thumb|250px]] | ||
It is often useful to visualize the projection of amino acids in an alpha helix viewed from the N or C terminus. Such a view is called a helical wheel. Helical wheels often reveal how certain residues or sites of mutation are enriched on one face of a predicted helix. | It is often useful to visualize the projection of amino acids in an alpha helix viewed from the N or C terminus. Such a view is called a helical wheel. Helical wheels often reveal how certain residues or sites of mutation are enriched on one face of a predicted helix. | ||
| Line 16: | Line 43: | ||
* [http://www.kael.net/helical.htm kael.net] | * [http://www.kael.net/helical.htm kael.net] | ||
== User notes == | == User notes == | ||
Latest revision as of 17:39, 17 June 2010
You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.
See Help:Bioinformatics Tools for more information about tools in EcoliWiki.
| Link/URL: |
See Links Section |
|---|---|
| What: |
Visualization of amino acids in an alpha helix viewed from the N or C terminus. |
| Who: |
|
| edit table |
Short Description
Share your knowledge and ideas. How you can help. See Help pages if you need help with using the wiki
It is often useful to visualize the projection of amino acids in an alpha helix viewed from the N or C terminus. Such a view is called a helical wheel. Helical wheels often reveal how certain residues or sites of mutation are enriched on one face of a predicted helix.
Links
Several sites have web-based software to draw helical wheels
- Raphael Zidovetzki's lab at UC-Riverside. This version allows a lot of customization of the view. Perl source code is also provided.
- modified version of the above at Texas A&M, patched to fix the view from the C-terminus and to manually override the hydrophobicity value for Valine.
- Univ. of Virginia
- CABM at Rutgers
- kael.net
User notes
See Also
References
See Help:References for how to manage references in EcoliWiki.