POPS and POPSCOMP: Difference between revisions
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Rapid calculation of solvent accessible surface area (SASA) from pdb files | Rapid calculation of solvent accessible surface area (SASA) from pdb files | ||
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!align=left {{table heading style}} |Who: | !align=left {{table heading style}} |Who: | ||
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Community Based | Community Based | ||
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== Short Description == | == Short Description == | ||
[[Image:Pops_home.jpg|right|thumb|300px|Home Page]] | |||
{{UserContentHelp}} | {{UserContentHelp}} | ||
POPS<ref name='PMID:12824328'/> and POPSCOMP<ref name='PMID:15980485'/> are tools for rapid calculation of solvent accessible surface area (SASA) from pdb files. POPS calculates accessible surface area for the whole protein, residues, or atoms. POPSCOMP looks at the change in ASA for all pairwise combinations of molecules in the structure. | POPS<ref name='PMID:12824328'/> and POPSCOMP<ref name='PMID:15980485'/> are tools for rapid calculation of solvent accessible surface area (SASA) from pdb files. POPS calculates accessible surface area for the whole protein, residues, or atoms. POPSCOMP looks at the change in ASA for all pairwise combinations of molecules in the structure. | ||
== Links == | == Links == | ||
Latest revision as of 21:38, 17 June 2010
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| What: |
Rapid calculation of solvent accessible surface area (SASA) from pdb files |
| Who: |
Community Based |
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Short Description
Share your knowledge and ideas. How you can help. See Help pages if you need help with using the wiki
POPS[1] and POPSCOMP[2] are tools for rapid calculation of solvent accessible surface area (SASA) from pdb files. POPS calculates accessible surface area for the whole protein, residues, or atoms. POPSCOMP looks at the change in ASA for all pairwise combinations of molecules in the structure.
Links
POPS and POPSCOMP can be run via a web interface at the wiki of the Division of Mathematical Biology at NIMR
Requirements
Hardware/Software requirements, if applicable
User notes
See Also
References
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