POPS and POPSCOMP

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Link/URL:

POPS and POPSCOMP

What:

Rapid calculation of solvent accessible surface area (SASA) from pdb files

Who:

Community Based

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Short Description

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POPS[1] and POPSCOMP[2] are tools for rapid calculation of solvent accessible surface area (SASA) from pdb files. POPS calculates accessible surface area for the whole protein, residues, or atoms. POPSCOMP looks at the change in ASA for all pairwise combinations of molecules in the structure.

Links

POPS and POPSCOMP can be run via a web interface at the wiki of the Division of Mathematical Biology at NIMR

Requirements

Hardware/Software requirements, if applicable

User notes

See Also

References

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  1. ↑ Cavallo, L et al. (2003) POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level. Nucleic Acids Res. 31 3364-6 PubMed
  2. ↑ Kleinjung, J & Fraternali, F (2005) POPSCOMP: an automated interaction analysis of biomolecular complexes. Nucleic Acids Res. 33 W342-6 PubMed
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