POPS and POPSCOMP: Difference between revisions

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!align=left {{table heading style}} |Link/URL:
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[http://mathbio.nimr.mrc.ac.uk/wiki/Online_Tools POPS and POPSCOMP]
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!align=left {{table heading style}} |What:
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Rapid calculation of solvent accessible surface area (SASA) from pdb files
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!align=left {{table heading style}} |Who:
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Community Based
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== Short Description ==
== Short Description ==
[[Image:Pops_home.jpg|right|thumb|300px|Home Page]]
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[[Image:Pops_home.jpg|right|thumb|300px|Home Page]]
POPS<ref name='PMID:12824328'/> and POPSCOMP<ref name='PMID:15980485'/> are tools for rapid calculation of solvent accessible surface area (SASA) from pdb files.  POPS calculates accessible surface area for the whole protein, residues, or atoms.  POPSCOMP looks at the change in ASA for all pairwise combinations of molecules in the structure.
POPS<ref name='PMID:12824328'/> and POPSCOMP<ref name='PMID:15980485'/> are tools for rapid calculation of solvent accessible surface area (SASA) from pdb files.  POPS calculates accessible surface area for the whole protein, residues, or atoms.  POPSCOMP looks at the change in ASA for all pairwise combinations of molecules in the structure.
== Links ==
== Links ==

Latest revision as of 21:38, 17 June 2010

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Link/URL:

POPS and POPSCOMP

What:

Rapid calculation of solvent accessible surface area (SASA) from pdb files

Who:

Community Based

edit table



Short Description

Home Page

Share your knowledge and ideas. How you can help. See Help pages if you need help with using the wiki
POPS[1] and POPSCOMP[2] are tools for rapid calculation of solvent accessible surface area (SASA) from pdb files. POPS calculates accessible surface area for the whole protein, residues, or atoms. POPSCOMP looks at the change in ASA for all pairwise combinations of molecules in the structure.

Links

POPS and POPSCOMP can be run via a web interface at the wiki of the Division of Mathematical Biology at NIMR

Requirements

Hardware/Software requirements, if applicable

User notes

See Also

References

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  1. ↑ Cavallo, L et al. (2003) POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level. Nucleic Acids Res. 31 3364-6 PubMed
  2. ↑ Kleinjung, J & Fraternali, F (2005) POPSCOMP: an automated interaction analysis of biomolecular complexes. Nucleic Acids Res. 33 W342-6 PubMed
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