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{{Tab On|Quickview|yciM}}{{Tab|Gene|yciM}}{{Tab|Gene Product(s)|yciM}}{{Tab|Expression|yciM}}{{Tab|Evolution|yciM}}{{Tab|On One Page|yciM}}{{TabsBottom}}
{{Tab On|Quickview|yciM}}{{Tab|Gene|yciM}}{{Tab|Gene Product(s)|yciM}}{{Tab|Expression|yciM}}{{Tab|Evolution|yciM}}{{Tab|On One Page|yciM}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yciM:Gene|''yciM]]'' (synonyms: ''ECK1275, b1280, JW1272'')<ref name='LIB:Riley_2006'/>
''yciM''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yciM:Gene_Product(s)|YciM product]]<ref name='LIB:Riley_2006'/>: conserved protein<ref name='LIB:Riley_2006'/>, B1280<ref name='LIB:EcoCyc10.6'/>, YciM<ref name='LIB:EcoCyc10.6'/>
''ECK1275, b1280, JW1272''<ref name='LIB:Riley_2006'/>, JW1272''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/>putative heat shock protein<ref name='LIB:EcoCyc11.1'/>
conserved protein<ref name='LIB:EcoCyc10.6'/>; putative heat shock protein<ref name='LIB:EcoCyc11.1'/>
 


TPR-repeats protein, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B1280<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YciM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1275, JW1272, b1280''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:yciS|yciS]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yciS|yciS]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yciM&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12691]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002356&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yciM&loc=MG1655%3A1338582..1339751,W3110%3A1342272..1343441,DH10B%3A1427978..1429147,REL606%3A1338930..1340099,BW2952%3A1229431..1230600]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1229431&end=1230600&gene=yciM&aa=mlellflllpvaaaygwymgrrsaqqnkqdeanrlsrdyvagvnfllsnqqdkavdlfldmlkedtgtveahltlgnlfrsrgevdrairihqtlmesasltyeqrllaiqqlgrdymaaglydraedmfnqltdetdfrigalqqllqiyqatsewqkaidvaerlvklgkdkqrveiahfycelalqhmasddldramtllkkgaaadknsarvsimmgrvfmakgeyakaveslqrvisqdrelvsetlemlqtcyqqlgktaewaeflqraveentgadaelmladiieardgseaaqvyitrqlqrhptmrvfhklmdyhlneaeegrakeslmvlrdmvgekvrskpryrcqkcgftaytlywhcpscrawstikpirgldgl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yciM+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yciM]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
YciM has six tandem TPR repeats that are usually involved in protein-protein interactions. SignalP weakly predicts a 24 aa signal peptide and also indicates a less likely 16 aa signal peptide which is annotated in UniProt; this ambiguiity and uncertainty means that experimental verification is needed.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yciM

Gene Synonym(s)

ECK1275, b1280, JW1272[1], JW1272

Product Desc.

conserved protein[2]; putative heat shock protein[3]

TPR-repeats protein, function unknown[4]

Product Synonyms(s)

conserved protein[1], B1280[2][1], YciM[2][1] , ECK1275, JW1272, b1280

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yciS[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


YciM has six tandem TPR repeats that are usually involved in protein-protein interactions. SignalP weakly predicts a 24 aa signal peptide and also indicates a less likely 16 aa signal peptide which is annotated in UniProt; this ambiguiity and uncertainty means that experimental verification is needed.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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