sdhA:Quickview: Difference between revisions

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{{Tab On|Quickview|sdhA}}{{Tab|Gene|sdhA}}{{Tab|Gene Product(s)|sdhA}}{{Tab|Expression|sdhA}}{{Tab|Evolution|sdhA}}{{Tab|On One Page|sdhA}}{{TabsBottom}}
{{Tab On|Quickview|sdhA}}{{Tab|Gene|sdhA}}{{Tab|Gene Product(s)|sdhA}}{{Tab|Expression|sdhA}}{{Tab|Evolution|sdhA}}{{Tab|On One Page|sdhA}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[sdhA:Gene|''sdhA]]'' (synonyms: ''ECK0712, b0723, JW0713, dhsA'')<ref name='LIB:Riley_2006'/>
''sdhA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[sdhA:Gene_Product(s)|SdhA product]]<ref name='LIB:Riley_2006'/>: succinate dehydrogenase, flavoprotein subunit<ref name='LIB:Riley_2006'/>, B0723<ref name='LIB:EcoCyc10.6'/>, DhsA<ref name='LIB:EcoCyc10.6'/>, SdhA<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:catalytic subcomplex of succinate dehydrogenase|catalytic subcomplex of succinate dehydrogenase]]<ref name='LIB:EcoCyc11.1'/>, [[:Category:Complex:succinate dehydrogenase|succinate dehydrogenase]]<ref name='LIB:EcoCyc11.1'/>
''ECK0712, b0723, JW0713, dhsA''<ref name='LIB:Riley_2006'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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succinate dehydrogenase flavoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
succinate dehydrogenase flavoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:catalytic subcomplex of succinate dehydrogenase|catalytic subcomplex of succinate dehydrogenase]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:succinate dehydrogenase|succinate dehydrogenase]]<ref name='LIB:EcoCyc11.1'/>


Succinate dehydrogenase (SQR) flavoprotein subunit; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''succinate dehydrogenase, flavoprotein subunit<ref name='LIB:Riley_2006'/>, B0723<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdhA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0712, JW0713, b0723''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:sdhDAB|sdhDAB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB, sucABCD
transcription unit(s): [[:Category:Txn_unit:sdhDAB|sdhDAB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=sdhA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10931]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000920&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=sdhA&loc=MG1655%3A755130..756896,W3110%3A756329..758095,DH10B%3A807722..809488,REL606%3A736698..738464,BW2952%3A657890..659656]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=657890&end=659656&gene=sdhA&aa=mklpvrefdavvigaggagmraalqisqsgqtcallskvfptrshtvsaqggitvalgnthednwewhmydtvkgsdyigdqdaieymcktgpeailelehmglpfsrlddgriyqrpfggqsknfggeqaartaaaadrtghallhtlyqqnlknhttifsewyaldlvknqdgavvgctalcietgevvyfkaratvlatggagriyqsttnahintgdgvgmairagvpvqdmemwqfhptgiagagvlvtegcrgeggyllnkhgerfmeryapnakdlagrdvvarsimieiregrgcdgpwgphaklkldhlgkevlesrlpgilelsrtfahvdpvkepipviptchymmggiptkvtgqaltvnekgedvvvpglfavgeiacvsvhganrlggnslldlvvfgraaglhlqesiaeqgalrdasesdveasldrlnrwnnnrngedpvairkalqecmqhnfsvfregdamakgleqlkvirerlknarlddtssefntqrvecleldnlmetayatavsanfrtesrgahsrfdfpdrddenwlchslylpesesmtrrsvnmepklrpafppkirty]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sdhA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sdhA]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
The sdhABCD operon is negatively regulated by ryhB RNA as part of indirect positive regulation by Fur. Binds TrxA (Kumar, 2004).<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

sdhA

Gene Synonym(s)

ECK0712, b0723, JW0713, dhsA[1]

Product Desc.

succinate dehydrogenase flavoprotein[2][3];

Component of catalytic subcomplex of succinate dehydrogenase[3]; succinate dehydrogenase[3]

Succinate dehydrogenase (SQR) flavoprotein subunit; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration[4]

Product Synonyms(s)

succinate dehydrogenase, flavoprotein subunit[1], B0723[2][1], DhsA[2][1], SdhA[2][1] , ECK0712, JW0713, b0723

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): sdhDAB[2], sdhCDAB-sucABCD[2], OP00142, sdhCDAB

Regulation/Activity
Quick Links



        

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Notes

[back to top]


The sdhABCD operon is negatively regulated by ryhB RNA as part of indirect positive regulation by Fur. Binds TrxA (Kumar, 2004).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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