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<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|garP}}{{Tab|Gene|garP}}{{Tab|Gene Product(s)|garP}}{{Tab|Expression|garP}}{{Tab On|Evolution|garP}}{{Tab|On One Page|garP}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46abf43aa9c50"  class=" tableEdit Evolution_homologs_table" 
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|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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YHAU
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From ECOO157CYC
 
|- class="tableEdit_footer"
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417596&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417596&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46abf46973b64"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00083 PFAM:PF00083]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
|
|
   
   
|-class='sortbottom'
|-
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Z46a0892f4d437&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF07690 PF07690  Major Facilitator Superfamily]
|
|-
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[[EcoCyc]]
|
EcoCyc:EG12760
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
|
EcoGene:EG12760
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
|
RegulonDB:ECK120002379
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
|
EchoBASE:EB2613
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
|
ASAP:ABE-0010279
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010934 (score: 1.000; bootstrap: 93%)
  • ENSANGP00000022197 (score: 1.000; bootstrap: 84%)
  • ENSANGP00000011442 (score: 0.700)
  • ENSANGP00000009081 (score: 0.301)
  • ENSANGP00000022236 (score: 0.264)
  • ENSANGP00000021422 (score: 0.226)
  • ENSANGP00000011785 (score: 0.216)
  • ENSANGP00000010456 (score: 0.196)
  • ENSANGP00000016038 (score: 0.169)
  • ENSANGP00000019885 (score: 0.125)
  • ENSANGP00000029280 (score: 0.110)
  • ENSANGP00000013021 (score: 0.092)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000010652 (score: 1.000; bootstrap: 92%)
  • ENSAPMP00000029890 (score: 1.000; bootstrap: 63%)
  • ENSAPMP00000003545 (score: 0.250)
  • ENSAPMP00000015840 (score: 0.243)
  • ENSAPMP00000032854 (score: 0.178)
  • ENSAPMP00000034543 (score: 0.148)
  • ENSAPMP00000003525 (score: 0.144)
  • ENSAPMP00000018328 (score: 0.144)
  • ENSAPMP00000008626 (score: 0.086)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G00370 (score: 1.000; bootstrap: 100%)
  • AT2G38060 (score: 1.000; bootstrap: 100%)
  • AT3G46980 (score: 1.000; bootstrap: 100%)
  • AT2G29650 (score: 0.594)
  • AT5G44370 (score: 0.109)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000009255 (score: 1.000; bootstrap: 94%)
  • ENSBTAP00000007935 (score: 0.750)
  • ENSBTAP00000001445 (score: 0.647)
  • ENSBTAP00000014654 (score: 0.213)
  • ENSBTAP00000003426 (score: 0.112)
  • ENSBTAP00000035519 (score: 0.103)
  • ENSBTAP00000026833 (score: 0.095)
  • ENSBTAP00000008247 (score: 0.082)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025040 (score: 1.000; bootstrap: 79%)
  • WBGene00029008 (score: 0.179)
  • WBGene00031579 (score: 0.171)
  • WBGene00042684 (score: 0.120)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00022647 (score: 1.000; bootstrap: 84%)
  • WBGene00008000 (score: 0.174)
  • WBGene00001135 (score: 0.168)
  • WBGene00011556 (score: 0.110)
  • WBGene00010755 (score: 0.110)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005458 (score: 1.000; bootstrap: 79%)
  • ENSCAFP00000015622 (score: 1.000; bootstrap: 55%)
  • ENSCAFP00000014842 (score: 0.685)
  • ENSCAFP00000010148 (score: 0.638)
  • ENSCAFP00000015668 (score: 0.379)
  • ENSCAFP00000015578 (score: 0.259)
  • ENSCAFP00000003868 (score: 0.209)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011106 (score: 1.000; bootstrap: -1%)
  • ENSCINP00000014430 (score: 1.000; bootstrap: 91%)
  • ENSCINP00000002822 (score: 0.250)
  • ENSCINP00000020110 (score: 0.248)
  • ENSCINP00000016071 (score: 0.205)
  • ENSCINP00000018354 (score: 0.196)
  • ENSCINP00000001647 (score: 0.168)
  • ENSCINP00000015291 (score: 0.156)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050105-4 (score: 1.000; bootstrap: 91%)
  • ZDB-GENE-030616-554 (score: 0.840)
  • ZDB-GENE-050105-5 (score: 0.128)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204713 (score: 1.000; bootstrap: 100%)
  • DDB0205875 (score: 0.300)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030452 (score: 1.000; bootstrap: 94%)
  • FBgn0034392 (score: 1.000; bootstrap: 94%)
  • FBgn0038799 (score: 1.000; bootstrap: 89%)
  • FBgn0034394 (score: 0.422)
  • FBgn0010651 (score: 0.370)
  • FBgn0033234 (score: 0.290)
  • FBgn0034784 (score: 0.287)
  • FBgn0034783 (score: 0.278)
  • FBgn0050272 (score: 0.270)
  • FBgn0050265 (score: 0.267)
  • FBgn0034782 (score: 0.262)
  • FBgn0033048 (score: 0.244)
  • FBgn0024315 (score: 0.241)
  • FBgn0039886 (score: 0.238)
  • FBgn0031424 (score: 0.225)
  • FBgn0034785 (score: 0.224)
  • FBgn0010497 (score: 0.204)
  • FBgn0029727 (score: 0.198)
  • FBgn0031645 (score: 0.195)
  • FBgn0031307 (score: 0.165)
  • FBgn0028513 (score: 0.164)
  • FBgn0034490 (score: 0.144)
  • FBgn0016684 (score: 0.140)
  • FBgn0058263 (score: 0.073)
  • FBgn0025684 (score: 0.053)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18114-PA (score: 1.000; bootstrap: 93%)
  • GA18084-PA (score: 1.000; bootstrap: 87%)
  • GA13487-PA (score: 1.000; bootstrap: 87%)
  • GA13486-PA (score: 0.396)
  • GA21326-PA (score: 0.356)
  • GA15741-PA (score: 0.320)
  • GA22061-PA (score: 0.319)
  • GA15735-PA (score: 0.288)
  • GA20823-PA (score: 0.274)
  • GA15178-PA (score: 0.250)
  • GA15786-PA (score: 0.238)
  • GA17586-PA (score: 0.236)
  • GA18795-PA (score: 0.227)
  • GA20000-PA (score: 0.223)
  • GA18388-PA (score: 0.203)
  • GA22101-PA (score: 0.187)
  • GA22082-PA (score: 0.169)
  • GA10155-PA (score: 0.163)
  • GA13728-PA (score: 0.057)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018888 (score: 1.000; bootstrap: 92%)
  • ENSGALP00000005839 (score: 0.713)
  • ENSGALP00000025604 (score: 0.213)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000221485 (score: 1.000; bootstrap: 95%)
  • ENSP00000351776 (score: 0.751)
  • ENSP00000316909 (score: 0.701)
  • ENSP00000311506 (score: 0.217)
  • ENSP00000274755 (score: 0.113)
  • ENSP00000265425 (score: 0.110)
  • ENSP00000244527 (score: 0.098)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000023220 (score: 1.000; bootstrap: 94%)
  • ENSMMUP00000026804 (score: 0.610)
  • ENSMMUP00000019427 (score: 0.499)
  • ENSMMUP00000003481 (score: 0.123)
  • ENSMMUP00000003471 (score: 0.121)
  • ENSMMUP00000003473 (score: 0.077)
  • ENSMMUP00000010648 (score: 0.070)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011627 (score: 1.000; bootstrap: 94%)
  • ENSMODP00000006178 (score: 0.601)
  • ENSMODP00000023095 (score: 0.202)
  • ENSMODP00000017634 (score: 0.135)
  • ENSMODP00000005059 (score: 0.129)
  • ENSMODP00000013332 (score: 0.127)
  • ENSMODP00000016033 (score: 0.111)

From Inparanoid:20070104

Mus musculus

  • MGI:2156052 (score: 1.000; bootstrap: 92%)
  • MGI:3039629 (score: 0.698)
  • MGI:1920211 (score: 0.500)
  • MGI:1924105 (score: 0.221)
  • MGI:2443098 (score: 0.121)
  • MGI:2442850 (score: 0.110)
  • MGI:103209 (score: 0.099)
  • MGI:2389216 (score: 0.099)

From Inparanoid:20070104

Oryza gramene

  • Q652N5 (score: 1.000; bootstrap: 100%)
  • Q53WP9 (score: 1.000; bootstrap: 100%)
  • Q9SDI4 (score: 0.535)
  • Q8W0H5 (score: 0.365)
  • Q5N7A9 (score: 0.257)
  • Q53P54 (score: 0.130)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000045307 (score: 1.000; bootstrap: 94%)
  • ENSPTRP00000009086 (score: 0.466)
  • ENSPTRP00000019388 (score: 0.245)
  • ENSPTRP00000031355 (score: 0.222)
  • ENSPTRP00000030375 (score: 0.121)
  • ENSPTRP00000030376 (score: 0.097)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022383 (score: 1.000; bootstrap: 95%)
  • ENSRNOP00000028064 (score: 0.723)
  • ENSRNOP00000010207 (score: 0.712)
  • ENSRNOP00000012474 (score: 0.221)
  • ENSRNOP00000023241 (score: 0.085)
  • ENSRNOP00000029152 (score: 0.063)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR004C (score: 1.000; bootstrap: 100%)
  • YJR152W (score: 0.190)
  • YLL055W (score: 0.140)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000141633 (score: 1.000; bootstrap: 74%)
  • NEWSINFRUP00000158609 (score: 0.877)
  • NEWSINFRUP00000143039 (score: 0.742)
  • NEWSINFRUP00000171314 (score: 0.740)
  • NEWSINFRUP00000132367 (score: 0.595)
  • NEWSINFRUP00000131655 (score: 0.260)
  • NEWSINFRUP00000148094 (score: 0.057)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022797001 (score: 1.000; bootstrap: 77%)
  • GSTENP00024087001 (score: 0.656)
  • GSTENP00035063001 (score: 0.592)
  • GSTENP00017860001 (score: 0.585)
  • GSTENP00025579001 (score: 0.509)
  • GSTENP00018669001 (score: 0.217)
  • GSTENP00010472001 (score: 0.096)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000005429 (score: 1.000; bootstrap: 90%)
  • ENSXETP00000018393 (score: 0.674)
  • ENSXETP00000007371 (score: 0.478)
  • ENSXETP00000048895 (score: 0.223)

From Inparanoid:20070104

Shigella flexneri

YHAU

From SHIGELLACYC

E. coli O157

YHAU

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:EG12760

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12760

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002379

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2613

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010279

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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