garP:Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010934 (score: 1.000; bootstrap: 93%)
  • ENSANGP00000022197 (score: 1.000; bootstrap: 84%)
  • ENSANGP00000011442 (score: 0.700)
  • ENSANGP00000009081 (score: 0.301)
  • ENSANGP00000022236 (score: 0.264)
  • ENSANGP00000021422 (score: 0.226)
  • ENSANGP00000011785 (score: 0.216)
  • ENSANGP00000010456 (score: 0.196)
  • ENSANGP00000016038 (score: 0.169)
  • ENSANGP00000019885 (score: 0.125)
  • ENSANGP00000029280 (score: 0.110)
  • ENSANGP00000013021 (score: 0.092)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000010652 (score: 1.000; bootstrap: 92%)
  • ENSAPMP00000029890 (score: 1.000; bootstrap: 63%)
  • ENSAPMP00000003545 (score: 0.250)
  • ENSAPMP00000015840 (score: 0.243)
  • ENSAPMP00000032854 (score: 0.178)
  • ENSAPMP00000034543 (score: 0.148)
  • ENSAPMP00000003525 (score: 0.144)
  • ENSAPMP00000018328 (score: 0.144)
  • ENSAPMP00000008626 (score: 0.086)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G00370 (score: 1.000; bootstrap: 100%)
  • AT2G38060 (score: 1.000; bootstrap: 100%)
  • AT3G46980 (score: 1.000; bootstrap: 100%)
  • AT2G29650 (score: 0.594)
  • AT5G44370 (score: 0.109)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000009255 (score: 1.000; bootstrap: 94%)
  • ENSBTAP00000007935 (score: 0.750)
  • ENSBTAP00000001445 (score: 0.647)
  • ENSBTAP00000014654 (score: 0.213)
  • ENSBTAP00000003426 (score: 0.112)
  • ENSBTAP00000035519 (score: 0.103)
  • ENSBTAP00000026833 (score: 0.095)
  • ENSBTAP00000008247 (score: 0.082)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025040 (score: 1.000; bootstrap: 79%)
  • WBGene00029008 (score: 0.179)
  • WBGene00031579 (score: 0.171)
  • WBGene00042684 (score: 0.120)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00022647 (score: 1.000; bootstrap: 84%)
  • WBGene00008000 (score: 0.174)
  • WBGene00001135 (score: 0.168)
  • WBGene00011556 (score: 0.110)
  • WBGene00010755 (score: 0.110)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005458 (score: 1.000; bootstrap: 79%)
  • ENSCAFP00000015622 (score: 1.000; bootstrap: 55%)
  • ENSCAFP00000014842 (score: 0.685)
  • ENSCAFP00000010148 (score: 0.638)
  • ENSCAFP00000015668 (score: 0.379)
  • ENSCAFP00000015578 (score: 0.259)
  • ENSCAFP00000003868 (score: 0.209)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011106 (score: 1.000; bootstrap: -1%)
  • ENSCINP00000014430 (score: 1.000; bootstrap: 91%)
  • ENSCINP00000002822 (score: 0.250)
  • ENSCINP00000020110 (score: 0.248)
  • ENSCINP00000016071 (score: 0.205)
  • ENSCINP00000018354 (score: 0.196)
  • ENSCINP00000001647 (score: 0.168)
  • ENSCINP00000015291 (score: 0.156)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050105-4 (score: 1.000; bootstrap: 91%)
  • ZDB-GENE-030616-554 (score: 0.840)
  • ZDB-GENE-050105-5 (score: 0.128)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204713 (score: 1.000; bootstrap: 100%)
  • DDB0205875 (score: 0.300)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030452 (score: 1.000; bootstrap: 94%)
  • FBgn0034392 (score: 1.000; bootstrap: 94%)
  • FBgn0038799 (score: 1.000; bootstrap: 89%)
  • FBgn0034394 (score: 0.422)
  • FBgn0010651 (score: 0.370)
  • FBgn0033234 (score: 0.290)
  • FBgn0034784 (score: 0.287)
  • FBgn0034783 (score: 0.278)
  • FBgn0050272 (score: 0.270)
  • FBgn0050265 (score: 0.267)
  • FBgn0034782 (score: 0.262)
  • FBgn0033048 (score: 0.244)
  • FBgn0024315 (score: 0.241)
  • FBgn0039886 (score: 0.238)
  • FBgn0031424 (score: 0.225)
  • FBgn0034785 (score: 0.224)
  • FBgn0010497 (score: 0.204)
  • FBgn0029727 (score: 0.198)
  • FBgn0031645 (score: 0.195)
  • FBgn0031307 (score: 0.165)
  • FBgn0028513 (score: 0.164)
  • FBgn0034490 (score: 0.144)
  • FBgn0016684 (score: 0.140)
  • FBgn0058263 (score: 0.073)
  • FBgn0025684 (score: 0.053)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18114-PA (score: 1.000; bootstrap: 93%)
  • GA18084-PA (score: 1.000; bootstrap: 87%)
  • GA13487-PA (score: 1.000; bootstrap: 87%)
  • GA13486-PA (score: 0.396)
  • GA21326-PA (score: 0.356)
  • GA15741-PA (score: 0.320)
  • GA22061-PA (score: 0.319)
  • GA15735-PA (score: 0.288)
  • GA20823-PA (score: 0.274)
  • GA15178-PA (score: 0.250)
  • GA15786-PA (score: 0.238)
  • GA17586-PA (score: 0.236)
  • GA18795-PA (score: 0.227)
  • GA20000-PA (score: 0.223)
  • GA18388-PA (score: 0.203)
  • GA22101-PA (score: 0.187)
  • GA22082-PA (score: 0.169)
  • GA10155-PA (score: 0.163)
  • GA13728-PA (score: 0.057)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018888 (score: 1.000; bootstrap: 92%)
  • ENSGALP00000005839 (score: 0.713)
  • ENSGALP00000025604 (score: 0.213)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000221485 (score: 1.000; bootstrap: 95%)
  • ENSP00000351776 (score: 0.751)
  • ENSP00000316909 (score: 0.701)
  • ENSP00000311506 (score: 0.217)
  • ENSP00000274755 (score: 0.113)
  • ENSP00000265425 (score: 0.110)
  • ENSP00000244527 (score: 0.098)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000023220 (score: 1.000; bootstrap: 94%)
  • ENSMMUP00000026804 (score: 0.610)
  • ENSMMUP00000019427 (score: 0.499)
  • ENSMMUP00000003481 (score: 0.123)
  • ENSMMUP00000003471 (score: 0.121)
  • ENSMMUP00000003473 (score: 0.077)
  • ENSMMUP00000010648 (score: 0.070)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011627 (score: 1.000; bootstrap: 94%)
  • ENSMODP00000006178 (score: 0.601)
  • ENSMODP00000023095 (score: 0.202)
  • ENSMODP00000017634 (score: 0.135)
  • ENSMODP00000005059 (score: 0.129)
  • ENSMODP00000013332 (score: 0.127)
  • ENSMODP00000016033 (score: 0.111)

From Inparanoid:20070104

Mus musculus

  • MGI:2156052 (score: 1.000; bootstrap: 92%)
  • MGI:3039629 (score: 0.698)
  • MGI:1920211 (score: 0.500)
  • MGI:1924105 (score: 0.221)
  • MGI:2443098 (score: 0.121)
  • MGI:2442850 (score: 0.110)
  • MGI:103209 (score: 0.099)
  • MGI:2389216 (score: 0.099)

From Inparanoid:20070104

Oryza gramene

  • Q652N5 (score: 1.000; bootstrap: 100%)
  • Q53WP9 (score: 1.000; bootstrap: 100%)
  • Q9SDI4 (score: 0.535)
  • Q8W0H5 (score: 0.365)
  • Q5N7A9 (score: 0.257)
  • Q53P54 (score: 0.130)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000045307 (score: 1.000; bootstrap: 94%)
  • ENSPTRP00000009086 (score: 0.466)
  • ENSPTRP00000019388 (score: 0.245)
  • ENSPTRP00000031355 (score: 0.222)
  • ENSPTRP00000030375 (score: 0.121)
  • ENSPTRP00000030376 (score: 0.097)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022383 (score: 1.000; bootstrap: 95%)
  • ENSRNOP00000028064 (score: 0.723)
  • ENSRNOP00000010207 (score: 0.712)
  • ENSRNOP00000012474 (score: 0.221)
  • ENSRNOP00000023241 (score: 0.085)
  • ENSRNOP00000029152 (score: 0.063)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR004C (score: 1.000; bootstrap: 100%)
  • YJR152W (score: 0.190)
  • YLL055W (score: 0.140)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000141633 (score: 1.000; bootstrap: 74%)
  • NEWSINFRUP00000158609 (score: 0.877)
  • NEWSINFRUP00000143039 (score: 0.742)
  • NEWSINFRUP00000171314 (score: 0.740)
  • NEWSINFRUP00000132367 (score: 0.595)
  • NEWSINFRUP00000131655 (score: 0.260)
  • NEWSINFRUP00000148094 (score: 0.057)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022797001 (score: 1.000; bootstrap: 77%)
  • GSTENP00024087001 (score: 0.656)
  • GSTENP00035063001 (score: 0.592)
  • GSTENP00017860001 (score: 0.585)
  • GSTENP00025579001 (score: 0.509)
  • GSTENP00018669001 (score: 0.217)
  • GSTENP00010472001 (score: 0.096)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000005429 (score: 1.000; bootstrap: 90%)
  • ENSXETP00000018393 (score: 0.674)
  • ENSXETP00000007371 (score: 0.478)
  • ENSXETP00000048895 (score: 0.223)

From Inparanoid:20070104

Shigella flexneri

YHAU

From SHIGELLACYC

E. coli O157

YHAU

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:EG12760

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12760

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002379

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2613

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010279

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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Categories

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