qmcA:Quickview: Difference between revisions

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{{Tab On|Quickview|qmcA}}{{Tab|Gene|qmcA}}{{Tab|Gene Product(s)|qmcA}}{{Tab|Expression|qmcA}}{{Tab|Evolution|qmcA}}{{Tab|On One Page|qmcA}}{{TabsBottom}}
{{Tab On|Quickview|qmcA}}{{Tab|Gene|qmcA}}{{Tab|Gene Product(s)|qmcA}}{{Tab|Expression|qmcA}}{{Tab|Evolution|qmcA}}{{Tab|On One Page|qmcA}}{{TabsBottom}}
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{|   id="C49b02186de234"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[qmcA:Gene|''qmcA]]'' (synonyms: ''ybbK, ECK0483, b0489, JW0478'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''qmcA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[qmcA:Gene_Product(s)|YbbK product]]<ref name='LIB:Riley_2006'/>: predicted protease, membrane anchored<ref name='LIB:Riley_2006'/>, B0489<ref name='LIB:EcoCyc10.6'/>, YbbK<ref name='LIB:EcoCyc10.6'/>, QmcA<ref name='LIB:EcoCyc10.6'/>
''ybbK, ECK0483, b0489, JW0478''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW0478''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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putative protease<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
putative protease<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Multicopy suppressor of ftsH htpX double mutant; membrane-anchored with C-terminal cytoplasmic PHB domain; non-essential gene<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted protease, membrane anchored<ref name='LIB:Riley_2006'/>, B0489<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbbK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QmcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0483, JW0478, ybbK, b0489''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ybbJ|ybbJ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ybbJ|ybbJ]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=qmcA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6265]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002873&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=qmcA&loc=MG1655%3A514997..514080,W3110%3A514997..514080,DH10B%3A454328..453411,REL606%3A487024..487941,BW2952%3A416839..417756]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=416839&end=417756&gene=qmcA&aa=mlifipilifvalvivgagvkivpqgyqwtverfgrytktlqpglslvvpfmdrigrkinmmeqvldipsqeviskdnanvtidavcfiqvidapraayevsnlelaiinltmtnirtvlgsmeldemlsqrdsinsrllrivdeatnpwgikvtrieirdvrppaelissmnaqmkaertkrayileaegirqaeilkaegekqsqilkaegerqsaflqaearersaeaearatkmvseaiasgdiqavnyfvaqkytealqqigsssnskvvmmpleasslmgsiagiaelvkdsankrtqp]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=qmcA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=qmcA]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Prohibitin homology (PHB) domain. QmcA is oligomeric and interacts with ftsH. QmcA suppressor activity, but not protein synthesis, is stimulated by downstream NfeD/STOPP family gene ybbJ. QmcA expression from the chromosome is detected, but must be insufficient for suppression. QmcA is not stably complexed with FtsH, but they do physically interact.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

qmcA

Gene Synonym(s)

ybbK, ECK0483, b0489, JW0478[1][2], JW0478

Product Desc.

putative protease[2][3]

Multicopy suppressor of ftsH htpX double mutant; membrane-anchored with C-terminal cytoplasmic PHB domain; non-essential gene[4]

Product Synonyms(s)

predicted protease, membrane anchored[1], B0489[2][1], YbbK[2][1], QmcA[2][1] , ECK0483, JW0478, ybbK, b0489

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybbJ[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Prohibitin homology (PHB) domain. QmcA is oligomeric and interacts with ftsH. QmcA suppressor activity, but not protein synthesis, is stimulated by downstream NfeD/STOPP family gene ybbJ. QmcA expression from the chromosome is detected, but must be insufficient for suppression. QmcA is not stably complexed with FtsH, but they do physically interact.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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