yegE:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yegE''  
''yegE''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2061, b2067, JW2052''<ref name='LIB:Riley_2006'/>
''ECK2061, b2067, JW2052''<ref name='LIB:Riley_2006'/>, JW2052''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B2067<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YegE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B2067<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YegE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2061, JW2052, b2067''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yegE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12396]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002259&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yegE&loc=MG1655%3A2141290..2144607,W3110%3A2145403..2148720,DH10B%3A2232298..2235615,REL606%3A2076472..2079777,BW2952%3A2033773..2037090]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2033773&end=2037090&gene=yegE&aa=mskqsqhvlialphpllhlvslglvsfiftlfslelsqfgtqlaplwfptsimmvafyrhagrmwpgialscslgniaasillfstsslnmtwttiniveavvgavllrkllpwynplqnladwlrlalgsaivppllggvlvvlltpgddplrafliwvlsesigalalvplgllfkphyllrhrnprllfeslltlaitltlswlsmlylpwpftfiivllmwsavrlprmeafliflttvmmvslmmaadpsllatprtylmshmpwlpfllillpanimtmvmyafraerkhisesethfrnameysaigmalvgtegqwlqtnkalcqflgysqeelrgltfqqltwpedlnkdlqqveklisgeintysmekryynrngdvvwallavslvrhtdgtplyfiaqiedinelkrteqvnqqlmeritlaneaggigiwewelkpnifswdkrmfelyeipphikpnwqvwyecvlpedrqhaekvirdslqsrspfklefritvkdgirhiralanrvlnkegeverllginmdmtevkqlnealfqekerlhitldsigeavvcidmamkitfmnpvaekmsgwtqeealgvplltvlhitfgdngplmeniysadtsrsaieqdvvlhcrsggsydvhysitplstldgsnigsvlviqdvtesrkmlrqlsysashdalthlanrasfekqlrillqtvnsthqrhalvfidldrfkavndsaghaagdallrelaslmlsmlrssdvlarlggdefglllpdcnvesarfiatriisavndyhfiwegrvhrvgasagitliddnnhqaaevmsqadiacyasknggrgrvtvyepqqaaahseraamsldeqwrmikenqlmmlahgvaspripearnlwlislklwscegeiideqtfrrsfsdpalshaldrrvfheffqqaakavaskgisislplsvaglssatlvndlleqlensplpprllhliipaeaildhaesvqklrlagcrivlsqvgrdlqifnslkanmadyllldgelcanvqgnlmdemlitiiqghaqrlgmktiagpvvlplvmdtlsgigvdliygeviadaqpldllvnssyfain]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yegE+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yegE]]&nbsp;&nbsp;


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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yegE

Gene Synonym(s)

ECK2061, b2067, JW2052[1], JW2052

Product Desc.

putative sensor-type protein[2][3]

Putative c-di-GMP dual activity enzyme, function unknown[4]

Product Synonyms(s)

predicted diguanylate cyclase, GGDEF domain signalling protein[1], B2067[2][1], YegE[2][1] , ECK2061, JW2052, b2067

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yegE[2]

Regulation/Activity
Quick Links



        

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Notes

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A yegE null mutation partially suppresses the motility defect of a yhjH mutation; yegE partial suppression is best at 28C, full yhjH suppression requires yegE and yedQ mutations; a yeaJ null mutation is a better yhjH suppressor at 37C; full yhjH suppression requires yegE, yedQ and yeaJ null mutations when grown at 37C (Pesavento, 2008). YegE has an N-terminal MASE1 and three PAS domains, then a diguanylate cyclase GGDEF domain, followed by a C-terminal cyclic-di-GMP phosphodiesterase EAL domain. RpoS regulon (Pesavento, 2008).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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