ycbX:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ycbX''  
''ycbX''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0938, b0947, JW5126''<ref name='LIB:Riley_2006'/>
''ECK0938, b0947, JW5126''<ref name='LIB:Riley_2006'/>, JW5126''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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predicted 2Fe-2S cluster-containing protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted 2Fe-2S cluster-containing protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


6-N-hydroxylaminopurine resistance, function unknown<ref name='LIB:EcoGene'/>
6-N-hydroxylaminopurine resistance, Molybdenum cofactor binding protein<ref name='LIB:EcoGene'/><ref name='PMID:18312271'/><ref name='PMID:20118259'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted 2Fe-2S cluster-containing protein<ref name='LIB:Riley_2006'/>, YcbX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0947<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted 2Fe-2S cluster-containing protein<ref name='LIB:Riley_2006'/>, YcbX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0947<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0938, JW5126, b0947''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ycbX&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6487]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003087&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ycbX&loc=MG1655%3A1006823..1005714,W3110%3A1008022..1006913,DH10B%3A1060751..1059642,REL606%3A1024691..1023582,BW2952%3A908682..909791]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=908682&end=909791&gene=ycbX&aa=matlirlfihpvksmrgiglthaladvsglafdrifmitepdgtfitarqfpqmvrftpspvhdglhltapdgssayvrfadfatqdaptevwgthftariapdainkwlsgffsrevqlrwvgpqmtrrvkrhntvplsfadgypyllaneaslrdlqqrcpasvkmeqfrpnlvvsgasaweedrwkvirigdvvfdvvkpcsrcifttvspekgqkhpageplktlqsfrtaqdngdvdfgqnliarnsgvirvgdeveilatapakiygaaaaddtanitqqpdanvdidwqgqafrgnnqqvlleqlenqgiripyscragicgscrvqllegevtplkksamgddgtilccscvpktalklar]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycbX+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ycbX]]&nbsp;&nbsp;


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Latest revision as of 21:44, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ycbX

Gene Synonym(s)

ECK0938, b0947, JW5126[1], JW5126

Product Desc.

predicted 2Fe-2S cluster-containing protein[2][3]

6-N-hydroxylaminopurine resistance, Molybdenum cofactor binding protein[4][5][6]

Product Synonyms(s)

predicted 2Fe-2S cluster-containing protein[1], YcbX[2][1], B0947[2][1] , ECK0938, JW5126, b0947

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycbX[2]

Regulation/Activity
Quick Links



        

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Notes

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Molybdenum cofactor (MoCo), YcbX and YiiM are involved in the detoxification of 6-N-hydroxylaminopurine (HAP), which proceeds by a reduction to adenine (Kozmin, 2008).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Kozmin, SG et al. (2008) YcbX and yiiM, two novel determinants for resistance of Escherichia coli to N-hydroxylated base analogues. Mol. Microbiol. 68 51-65 PubMed
  6. ↑ Kozmin, SG et al. (2010) Role for CysJ flavin reductase in molybdenum cofactor-dependent resistance of Escherichia coli to 6-N-hydroxylaminopurine. J. Bacteriol. 192 2026-33 PubMed
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