hcp:Quickview: Difference between revisions

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|-
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''hcp''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0864, b0873, JW0857, ybjW, priS''<ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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hybrid-cluster protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Hydroxylamine reductase, hybrid-cluster [2Fe-2S] protein <ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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''hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases<ref name='LIB:Riley_2006'/>, Hcp<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0873<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbjW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PriS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, fuscoredoxin<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, prismane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0864, JW0857, ybjW, b0873''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hcp-hcr|hcp-hcr]]<ref name='LIB:EcoCyc10.6'/>
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
|-
!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hcp&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6457]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003057&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hcp&loc=MG1655%3A913037..911385,W3110%3A914236..912584,DH10B%3A966965..965313,REL606%3A930521..928869,BW2952%3A814353..816005]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=814353&end=816005&gene=hcp&aa=mimfcvqceqtirtpagngcsyaqgmcgktaetsdlqdlliaalqglsawavkareygiinhdvdsfapraffstltnvnfdsprivgyareaialrealkaqclavdanarvdnpmadlqlvsddlgelqrqaaeftpnkdkaaigenilglrllclyglkgaaaymehahvlgqydndiyaqyhkimawlgtwpadmnallecsmeigqmnfkvmsildagetgkyghptptqvnvkatagkcilisghdlkdlynlleqtegtgvnvythgemlpahgypelrkfkhlvgnygsgwqnqqvefarfpgpivmtsnciidptvgayddriwtrsivgwpgvrhldgddfsavitqaqqmagfpyseiphlitvgfgrqtllgaadtlidlvsreklrhifllggcdgargerhyftdfatsvpddcliltlacgkyrfnklefgdieglprlvdagqcndaysaiilavtlaeklgcgvndlplslvlswfeqkaivilltllslgvknivtgptapgfltpdllavlnekfglrsittveedmkqllsa]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcp+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hcp]]&nbsp;&nbsp;


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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hcp

Gene Synonym(s)

ECK0864, b0873, JW0857, ybjW, priS[1]

Product Desc.

hybrid-cluster protein[2][3]

Hydroxylamine reductase, hybrid-cluster [2Fe-2S] protein [4]

Product Synonyms(s)

hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases[1], Hcp[2][1], B0873[2][1], YbjW[2][1], PriS[2][1], fuscoredoxin[2][1], prismane protein[2][1] , ECK0864, JW0857, ybjW, b0873

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hcp-hcr[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Hcp is in an operon and associated with the Hcr oxidoreductase. It is not known if Hcp is a physiologically relevant substrate but Hcp can degrade it in vivo. Hcp is also called fuscoredoxin or prismane protein. Hcp is expressed anaerobically with nitrate or nitrite as terminal electron acceptors and may be involved in metabolizing byproducts of nitrogen metabolism, which might include hydroxylamine. Alternatively is coudl be a catbolic enzyme for an exogeneous substrate, including hydroxylamine. Hcp is upregulated by GSNO in defined medium. FNR regulon.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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