bhsA:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''bhsA''  
''bhsA''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ycfR, ECK1098, b1112, JW1098''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''ycfR, ECK1098, b1112, JW1098''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, JW1098''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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conserved hypothetical protein<ref name='LIB:EcoCyc10.6'/>; protein involved in stress resistance and biofilm formation<ref name='LIB:EcoCyc11.1'/>
conserved hypothetical protein<ref name='LIB:EcoCyc10.6'/>; protein involved in stress resistance and biofilm formation<ref name='LIB:EcoCyc11.1'/>


Biofilm, cell surface and signaling defects, YhcN family; molecular and physiological function unknown<ref name='LIB:EcoGene'/>
Biofilm, cell surface and signaling defects, member of [[YhcN Family]]; molecular and physiological function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted protein<ref name='LIB:Riley_2006'/>, B1112<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcfR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BhsA<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
''predicted protein<ref name='LIB:Riley_2006'/>, B1112<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcfR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BhsA<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK1098, JW1098, ycfR, b1112''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=bhsA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6570]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003166&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=bhsA&loc=MG1655%3A1168296..1168553,W3110%3A1170650..1170907,REL606%3A1183667..1183924,BW2952%3A1072221..1072478]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1072221&end=1072478&gene=bhsA&aa=mknvktliaaailssmsfasfaavevqstpegqqkvgtisanagtnlgsleeqlaqkademgaksfritsvtgpntlhgtaviyk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bhsA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=bhsA]]&nbsp;&nbsp;


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Complex mutant  phenotype includes sensitivity to acid, heat, hydrogen peroxide, and cadmium, as well as 5-fold increased biofilm in the presence of glucose, increased cell surface hydrophobicity, and increased aggregation; the mutant phenotype of enhanced biofilm formation upon stress is suppressed by exogenous indole or by a tnaA mutation (Zhang, 2007). Induced during biofilm formation. Crp regulon. Probable periplasmic protein. The first 22 aa are predicted to be a type I signal peptide.<ref name='LIB:EcoGene'/>
Complex mutant  phenotype includes sensitivity to acid, heat, hydrogen peroxide, and cadmium, as well as 5-fold increased biofilm in the presence of glucose, increased cell surface hydrophobicity, and increased aggregation; the mutant phenotype of enhanced biofilm formation upon stress is suppressed by exogenous indole or by a tnaA mutation (Zhang, 2007). Induced during biofilm formation. Crp regulon. Probable periplasmic protein. The first 22 aa are predicted to be a type I signal peptide.<ref name='LIB:EcoGene'/>
BhsA (YcfR) is a member of the [[YhcN_Family]] of paralogs.<ref name='PMID:9588799'/>






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==References==
==References==
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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

bhsA

Gene Synonym(s)

ycfR, ECK1098, b1112, JW1098[1][2], JW1098

Product Desc.

conserved hypothetical protein[3]; protein involved in stress resistance and biofilm formation[2]

Biofilm, cell surface and signaling defects, member of YhcN Family; molecular and physiological function unknown[4]

Product Synonyms(s)

predicted protein[1], B1112[3][1], YcfR[3][1], BhsA[2][1] , ECK1098, JW1098, ycfR, b1112

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycfR[3]

Regulation/Activity
Quick Links



        

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Notes

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Complex mutant phenotype includes sensitivity to acid, heat, hydrogen peroxide, and cadmium, as well as 5-fold increased biofilm in the presence of glucose, increased cell surface hydrophobicity, and increased aggregation; the mutant phenotype of enhanced biofilm formation upon stress is suppressed by exogenous indole or by a tnaA mutation (Zhang, 2007). Induced during biofilm formation. Crp regulon. Probable periplasmic protein. The first 22 aa are predicted to be a type I signal peptide.[4]

BhsA (YcfR) is a member of the YhcN_Family of paralogs.[5]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Rudd, KE et al. (1998) Low molecular weight proteins: a challenge for post-genomic research. Electrophoresis 19 536-44 PubMed
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