gfcD:Quickview: Difference between revisions

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{|   id="D49aee71cebff6" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[gfcD:Gene|''gfcD]]'' (synonyms: ''ymcA, ECK0975, b0984, JW0967'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''gfcD''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[gfcD:Gene_Product(s)|YmcA product]]<ref name='LIB:Riley_2006'/>: conserved protein product, B0984 product, GfcD product
''ymcA, ECK0975, b0984, JW0967''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>, JW0967''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/> putative lipoprotein<ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/>; putative lipoprotein<ref name='LIB:EcoCyc11.1'/>


Required for formation of the O-antigen capsule; silenced by IS1D insertion in promoter region<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B0984<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YmcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GfcD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0975, JW0967, ymcA, b0984''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ymcA|ymcA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ymcA|ymcA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gfcD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6505]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003105&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gfcD&loc=MG1655%3A1047168..1045072,W3110%3A1048367..1046271,DH10B%3A1101096..1099000,REL606%3A1062940..1065036,BW2952%3A948040..950136]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=948040&end=950136&gene=gfcD&aa=mkknsyllsclaiavssachaevltypdplgssqsdfggtgllqmpnariapegefsvnyrdndqyrfystsvalfpwlegtirytdvrtrkysqwedfsgdqsykdksfdfklrlweegywlpqvafgkrdiagtglfdgeylvaskqagpfdftlgmawgyagnagnitnpfcrvsdkychraeshdagdisfsdifrgpasifggieyqtpwnplrlkleydgnnyqndfagklpqashfnvgavyraaswadlnlsyergntlmfgftlrtnfndlrpalrdtpkpayqpapeseglqyttvanqltalkynagfdapeiqlrdktlymsgqqykyrdsreavdranrilvnnlpqgvekisvtqkrehmamvttetdvaslrkqlagtapgqseplqqqrveaedlsafgrgyriredrfsysfnptlsqslggpedfymfqlglmssarywftdhllldggiftniynnydkfkssllpadstlprvrthirdyvrndvylnnlqanyfadlgngfygqvyggyletmyagvgsellyrpldacwalgvdvnyvkqrdwdnmmrftdystptgfvtaywnpptlngvlmklsvgqylakdkgatidvakrfdsgvavgvwaaisnvskddygeggfskgfyisipfdlmtigpnrnravvswtpltrdggqmlsrkyqlypmtaerevpvgq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gfcD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gfcD]]&nbsp;&nbsp;


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Latest revision as of 21:50, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gfcD

Gene Synonym(s)

ymcA, ECK0975, b0984, JW0967[1][2][3], JW0967

Product Desc.

conserved protein[3]; putative lipoprotein[2]

Required for formation of the O-antigen capsule; silenced by IS1D insertion in promoter region[4]

Product Synonyms(s)

conserved protein[1], B0984[3][1], YmcA[3][1], GfcD[3][1] , ECK0975, JW0967, ymcA, b0984

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ymcA[3]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Function characterized in enteropathogenic E. coli (EPEC). gfcD and yjbH are paralogs. GfcD has both type I (21 aa) and (slightly better) type II (17 aa) signal peptide predictions by SignalP/LipoP. GfcD is not likely to be a lipoprotein because the lipobox Cys is poorly conserved. Part of the gfcABCDE-etp-etk operon.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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