livJ:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Adding EcoGene Comments
touch
 
(11 intermediate revisions by 2 users not shown)
Line 17: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79.8650.V46a9a1bfbbd04-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.8650.G49aeeb2fd8fe9-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 24: Line 24:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="G49aeeb2fd8fe9" class=" tableEdit New_Quickview_Table"


|-
|-
!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
||
||
[[livJ:Gene|''livJ]]'' (synonyms: ''ECK3444, b3460, JW3425, hrbB, hrbC, hrbD'')<ref name='LIB:Riley_2006'/>
''livJ''
|-
|-
!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
[[livJ:Gene_Product(s)|LivJ product]]<ref name='LIB:Riley_2006'/>: leucine/isoleucine/valine transporter subunit product, periplasmic-binding component of ABC superfamily product, B3460 product, HrbC product, HrbD product, HrbB product
''ECK3444, b3460, JW3425, hrbB, hrbC, hrbD''<ref name='LIB:Riley_2006'/>, hrbD''
|-
|-
!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
||
||
LivJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
LivJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:branched chain amino acids ABC transporter|branched chain amino acids ABC transporter]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:branched chain amino acids ABC transporter|branched chain amino acids ABC transporter]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Leu/Ile/Val-binding protein, periplasmic, high-affinity transport; LIV-I system; also involved in phenylalanine accumulation<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''leucine/isoleucine/valine transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3460<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HrbC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HrbD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HrbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LivJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3444, hrbB, hrbC, hrbD, JW3425, b3460''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
||
Resistant to low levels L-valine (0.4 micromolar) on glucose minimal medium; lacks the LIV-1 high affinity leucine/valine/isoleucine uptake system; lacks the leucine/valine/isoleucine binding protein. <ref name='PMID:323236'/>
Resistant to low levels L-valine (0.4 micromolar) on glucose minimal medium; lacks the LIV-1 high affinity leucine/valine/isoleucine uptake system; lacks the leucine/valine/isoleucine binding protein. <ref name='PMID:323236'/>
|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:livJ|livJ]]<ref name='LIB:EcoCyc10.6'/>, OP00255  
transcription unit(s): [[:Category:Txn_unit:livJ|livJ]]<ref name='LIB:EcoCyc10.6'/>, OP00255  
Line 53: Line 62:
||
||
Repressed by L-leucine via the global transcription factor lrp.
Repressed by L-leucine via the global transcription factor lrp.
|-
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=livJ&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10539]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000532&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=livJ&loc=MG1655%3A3597681..3596578,W3110%3A4040757..4041860,REL606%3A3530343..3529240,DH10B%3A3695426..3694323,BW2952%3A3485072..3486175]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3485072&end=3486175&gene=livJ&aa=mnikgkallagcialafsnmalaedikvavvgamsgpvaqygdqeftgaeqavadinakggikgnklqivkyddacdpkqavavankvvndgikyvighlcssstqpasdiyedegilmitpaatapeltargyqlilrttgldsdqgptaakyilekvkpqriaivhdkqqygeglaravqdglkkgnanvvffdgitagekdfstlvarlkkenidfvyyggyhpemgqilrqaraaglktqfmgpegvanvslsniagesaegllvtkpknydqvpankpivdaikakkqdpsgafvwttyaalqslqaglnqsddpaeiakylkansvdtvmgpltwdekgdlkgfefgvfdwhangtatdak]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=livJ+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=livJ]]&nbsp;&nbsp;


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.8650.V46a9a1bfbbd04&page=8650&pagename={{FULLPAGENAMEE}}&type=1&template=Quickview_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.8650.G49aeeb2fd8fe9&page=8650&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.8650.V46a9a1bfbbd04-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.8650.G49aeeb2fd8fe9--></protect>
{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>

Latest revision as of 21:48, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

livJ

Gene Synonym(s)

ECK3444, b3460, JW3425, hrbB, hrbC, hrbD[1], hrbD

Product Desc.

LivJ[2][3];

Component of branched chain amino acids ABC transporter[2][3]

Leu/Ile/Val-binding protein, periplasmic, high-affinity transport; LIV-I system; also involved in phenylalanine accumulation[4]

Product Synonyms(s)

leucine/isoleucine/valine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B3460[2][1], HrbC[2][1], HrbD[2][1], HrbB[2][1], LivJ[2][1] , ECK3444, hrbB, hrbC, hrbD, JW3425, b3460

Function from GO

<GO_nr />

Knock-Out Phenotype

Resistant to low levels L-valine (0.4 micromolar) on glucose minimal medium; lacks the LIV-1 high affinity leucine/valine/isoleucine uptake system; lacks the leucine/valine/isoleucine binding protein. [5]

Regulation/Expression

transcription unit(s): livJ[2], OP00255

Regulation/Activity

Repressed by L-leucine via the global transcription factor lrp.

Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


After four hours of Zn(II) stress, LivJ protein levels decreased (Easton, 2006).[4]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Anderson, JJ & Oxender, DL (1977) Escherichia coli transport mutants lacking binding protein and other components of the branched-chain amino acid transport systems. J. Bacteriol. 130 384-92 PubMed
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=livJ:Quickview&oldid=1396619"